biota
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This record describes the sample collection location for grey nurse shark as part of NESP MB Project A9 - Grey Nurse Shark CK-MR Population Estimate – East Coast. The data attached to this record describes the locations and vB parameters of tissue samples collected between December 2002 and April 2017. Sequencing data will be added to ALA as it becomes available. See https://fieldcapture.ala.org.au/project/index/b3376517-e418-4a38-ba45-63faae7ed8be for updates.
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Raw time series of depth, water temperature, light and swim speed. Stomach temperature and heart rate are available in some instances, but the data is sparse. Data was collected using time/depth recorders and satellite telemetry. Ancillary location was recorded from a separate logger.
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Ocean alkalinity enhancement (OAE) is a promising carbon removal method, but it may cause a significant perturbation of the ocean with trace metals such as Nickel (Ni). This study tested the effect of increasing Ni concentrations on phytoplankton growth and photosynthesis. The data were the growth rates of 11 phytoplankton species under different Ni concentrations (Master thesis project). The growth rates were calculated using daily fluorescence signal values measured by the fluorometer. Fv/Fm and SigmaPSII data were measured using Fast repetition rate fluorometry (FRRf). The growth rate and photo-physiological response of phytoplankton was analysed using generalised additive models (GAMs) and plotted in RStudio (R packages “mgcv” and “ggplot2”).
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The impacts of a small, free-field, surface explosion from a ship scuttling, on two crustacean species was examined. The southern rock lobster (Jasus edwardsii) and the spotted shore crab (Paragrapsus gaimardii) were used to compare the effects on crustaceans in a controlled experiment on animals distributed up to 500 m from the blasts. Methods for assessing damage included; mortality, behavioural experiments, and physiological assessments.
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The Tasman Fracture CMR AUV survey was a pilot study undertaken in 2014/15 as part of the National Marine Biodiversity Hub's National monitoring, evaluation and reporting theme. The aim of this theme is to develop a bluepint for the sustained monitoring of the South-east Commonwealth Marine Reserve Network. The particular aim of the survey was to contribute to an inventory of the distribution and cover of epibenthic biota in the reserve using IMOS AUV 'Sirius'. Data contained here represents a scored subset of the ~ 18,400 images collected at the Tasman Fracture CMR. Images were scored for proportion cover of visible macrobiota using 25 random points superimposed on each image. Taxon were biologically classified using UTAS morphospecies classification scheme, which can be mapped back to CATAMI (http://catami.org/).
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This data set consists of a scored time-series of Autonomous Underwater Vehicle (AUV) images from the Bicheno region on the east coast of Tasmania. Surveys were conducted between 2011 and 2016 within the Governor Island Marine Reserve and nearby sites outside the reserve. Governor Island was surveyed in 2011, 2013, 2014 and 2016. The outside sites of Trap Reef, Cape Lodi and Butlers Point were surveyed in 2011, 2013 and 2016. Imagery across all surveys was scored for the presence of Centrostephanus rodgersii urchin barrens across rocky reef at each site. Prior to analysis the data was subsetted to every fifth image to avoid overlapping images. The data set also contains depth information for each image and a measure of rugosity (Vector Rugosity Measure) computed in ArcGIS software from a one metre resolution bathymetric map covering the survey sites. Analysis was conducted to examine the trend in the presence of barrens through time and to compare the occurrence of barrens inside the Governor Island Marine Reserve with sites outside the reserve. A spatio-temporal model incorporating both spatial and temporal correlation in the time-series of data was used. This data set contains the scored data used in the analysis. Further details of the methods used and results are contained in the following article. Please cite any use of the data or code by citing this article: Perkins NR, Hosack GR, Foster SD, Monk J, Barrett NS (2020) Monitoring the resilience of a no-take marine reserve to a range extending species using benthic imagery. PLOS ONE 15(8): e0237257. https://doi.org/10.1371/journal.pone.0237257
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Seasonal patterns in the in situ ecophysiology of the common habitat-forming seaweeds Ecklonia radiata, Phyllospora comosa, and Macrocystis pyrifera were investigated at different latitudes and depths in southeastern Australia. We used multiple performance indicators (photosynthetic characteristics, pigment content, chemical composition, stable isotopes, nucleic acids) to assess the ecophysiology of seaweeds near the northern and southern margins of their range, along a depth gradient (E. radiata only), over a two year period (September 2010 – August 2012).
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This dataset derives from deployments of pelagic baited camera systems (stereo-BRUVS) conducted within the Oceanic Shoals Commonwealth Marine Reserve (CMR) in the Timor Sea during September and October 2012 onboard the RV Solander. This resource comprises species lists and relative abundance data (measured as MaxN, the maximum number of individuals of a given species captured in any one frame) for 116 sampling sites surveyed across three focal areas. The Oceanic Shoals Commonwealth Marine Reserve survey was undertaken as an activity within the Australian Government's National Environmental Research Program Marine Biodiversity Hub and was the key component of Research Theme 4 - Regional Biodiversity Discovery to Support Marine Bioregional Plans. Hub partners involved in the survey included the Australian Institute of Marine Science, Geoscience Australia, the University of Western Australia, Museum Victoria and the Museum and Art Gallery of the Northern Territory. Data acquired during the survey included: multibeam sonar bathymetry and acoustic backscatter; sub-bottom acoustic profiles; physical samples of seabed sediments, infauna and epibenthic biota; towed underwater video and still camera observations of seabed habitats; baited video observations of demersal and pelagic fish, and; oceanographic measurements of the water column from CTD (conductivity, temperature, depth) casts and from deployment of sea surface drifters. Further information on the survey is available in the post-survey report published as Geoscience Australia Record 2013/38: Nichol, S.L., Howard, F.J.F., Kool, J., Stowar, M., Bouchet, P., Radke, L.,Siwabessy, J., Przeslawski, R., Picard, K., Alvarez de Glasby, B., Colquhoun, J., Letessier, T. & Heyward, A. 2013. Oceanic Shoals Commonwealth Marine Reserve (Timor Sea) Biodiversity Survey: GA0339/SOL5650 - Post Survey Report. Record 2013/38. Geoscience Australia: Canberra. (GEOCAT #76658).
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The Tasman Fracture CMR AUV survey was a pilot study undertaken in 2014/15 as part of the National Marine Biodiversity Hub's National monitoring, evaluation and reporting theme. The aim of this theme is to develop a blueprint for the sustained monitoring of the South-east Commonwealth Marine Reserve Network. The particular aim of the survey was to contribute to an inventory of the distribution and abundance of southern rock lobster (Jasus edwardsi). Data contained here represents the data collected from lobster potting component of the study. This includes lobster abundance, gender and length. Bycatch is also recorded.
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Gillnet fishing trials at a number of sites off the east coast of Tasmania have been undertaken to collect samples of the banded morwong, which are characterised based on size, age, maturity stage and sex structure. Otoliths are sectioned for age determination. The dataset comprises a major component of work carried out from the beginning of 2001 and available historic data (1995 to 2000) have also been uploaded into this database to provide a complete dataset. See attached reports for further information.