***NOTE THIS RECORD HAS BEEN SUPERSEDED BY NESP PROJECT E2 (details below)*** Cumulative Sound Exposure Levels of shipping traffic in Australian waters was undertaken over a one year period (Sept. 2015 to Oct 2016) within the Australian Exclusive Economic Zone. A proof of concept cumulative ship noise map was developed around Australia using the Perth Canyon source spectra as the source level for different vessel type categories. Sound propagation models were then run cumulatively, integrating the time spent by ships within a grid cell over the one-year period. This record describes the proof of concept map of commercial shipping noise in Australian waters developed under NESP Project C5. Refer to final report (https://www.nespmarine.edu.au/document/quantification-risk-shipping-large-marine-fauna-across-australia-final-report) for full methodology and PDF map. The ship noise modelling demonstrated the potential for using simple and readily accessible transmission models to provide an accurate representation of shipping noise within the marine soundscape. A subsequent high resolution sound exposure map was generated under NESP Project E2. See https://catalogue.aodn.org.au/geonetwork/srv/en/metadata.show?uuid=480847b4-b692-4112-89ff-0dcef75e3b84

This study considered a range of water-column and sediment (benthos) based variables commonly used to monitor estuaries,utilising estuaries on the North-West Coast of Tasmania (Duck, Montagu, Detention, and Black River). These included: salinity, dissolved oxygen, turbidity, nutrient and chlorophyll a levels for the water-column; and sediment redox, organic carbon content, chlorophyll a and macroinvertebrate community structure amongst the benthos. In addition to comparing reference with impacted estuaries, comparisons were also made across seasons, commensurate with seasonal changes in freshwater river input, and between regions within estuaries (upper and lower reaches) - previously identified in Hirst et al. (2005). This design enabled us to examine whether the detection of impacts (i.e. differences between reference and impacted systems) was contingent on the time and location of sampling or independent of these factors. The data represented by this record was collected in the Black River.

The Indonesian Throughflow (ITF) is connects the Pacific Ocean and the Indian Ocean in the tropics. The ITF plays an essential role in ocean circulation and regional climate: it hosts strong mixing that can change water-mass properties, influences the sea surface temperature in both oceans and affects the global ocean volume and heat transports. The ITF transports water properties across Indonesian Seas characterized by complex topography with most of the water entering through two main inflow straits, Makassar and Lifamatola straits, and exiting into the Indian Ocean through three main outflow straits, Ombai, Lombok and Timor straits. The ITF shows variabilities on different time scales, including decadal, interannual, seasonal and intra-seasonal. The ITF variability on intra-seasonal time scales is driven by remotely generated Kelvin and Rossby waves that propagate into the Indonesian Seas from the Indian Ocean and Pacific Ocean. This project focuses on the variability driven by Kelvin waves that propagate into Indonesian seas through three main outflow straits (Ombai, Lombok and Timor). We use a global ocean model and a high-resolution regional ITF model to characterize these variabilities at different depths and in different straits. We also use the mooring observations from the INSTANT program to validate the ocean models.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A4 - "The status of human-shark interactions and initiatives to mitigate risk in Australia". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Considerable political, public and media attention has recently been focussed on human-shark interactions, specifically surrounding shark attack and ways to mitigate this risk. Finding the most appropriate policy balance between conservation of sharks, maximising public safety and understanding the broader social and economic ramifications/drivers for doing so is a continuing challenge for Government. This project will review the status of human-shark interactions in Australia, provide a synthesis of current initiatives to reduce risk, review recent international efforts to address these issues and identify knowledge gaps to provide an informed base for determining the most appropriate future research and policy support. The project will develop a background document that: • Provides a synthesis of the current state of knowledge of shark-human interactions in Australia, focussing specifically on species such as white sharks, bull sharks and tiger sharks • Identifies what initiatives are currently underway nationally to address human-shark interactions including the status of current research as well as current management and policy initiatives. • Identifies technological developments within Australia and internationally in this space • Identifies lessons and experiences from these initiatives • Identifies issues and knowledge gaps • Provides guidance to the Department regarding further investment that is cognisant of State Government initiatives and requirements and ensure a coordinated national knowledge base for addressing these issues

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A10 - "Conservation of handfish and their habitat". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Spotted and red handfish are critically endangered. Prior to 2019, this project commenced a scientifically robust monitoring program to track conservation trajectories and performance of recovery plan actions across all known sub-populations of Spotted Handfish. An innovative geo-reference photographic method provided both capture-mark-recapture information and sub-population fish densities as a proxy for abundance. Collecting this data was a crucial first step for a future project of targeted placement of artificial spawning habitat (ASH) and to determine minimum population size to inform sustainable capture of brood-stock for captive breeding. From 2019-2020, the project was extended to include Red Handfish. In accordance with the signed Handfish Recovery Plan, this project will conserve Red and Spotted Handfish through various direct conservation actions guided by research. This includes replanting of the degraded plastic artificial spawning habitats (ASH) with a re-designed array of ceramic units, assessment of taut eco-friendly moorings in critical spotted handfish habitat, genetic and capture mark recapture studies for both species, a population viability analysis (PVA) and performance assessment of management actions. The project will also continue a captive breeding project with industry, and engage with the broader community through talks, outreach and publications and re-establishment of the handfish recovery team.

Samples of Temperature and Salinity from a CTD profile have been measured at Station 2 in the Derwent Estuary between August 2012 and January 2013.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B4 - "Underpinning the repair and conservation of Australia’s threatened coastal-marine habitats". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The primary objective of this project is to provide essential research to underpin restoration efforts to increase the success and efficiency of shellfish and saltmarsh repair. The secondary objective is to quantify clear easily understood benefits of repair to further increase groundswell, Indigenous and interest group support for repair efforts. For Phase 2 this involves: Shellfish reefs 1. Providing critical research to underpin the success of companion works investments into Sydney rock oyster (Saccostrea glomerata) restoration in Qld and NSW 2. Ongoing engagement with Indigenous groups, focused around especially SEQ and NSW to match the emphasis on Sydney rock oyster; 3. Through the Nature Conservancy, linking to shellfish restoration works in Port Phillip Bay (Vic), St Vincent’s Gulf (SA) and Oyster Harbour (WA) so that a National Business Case complete with examples of successes to date can be developed; 4. Underpinning this succinct business case with an information base for any follow-on activities such as assessment of shellfish reefs as an endangered community. Salt marshes 1. Estimating the benefits of salt marsh repair for an easily publicly understood indicator - prawn species. 2. Undertaking this work in NSW and Qld in parallel with proposed repair works so that very concrete case studies are available to demonstrate the benefits of repair. Planned Outputs Shellfish reef project outputs: • A scientific paper published in an eminent, peer-reviewed journal describing the ecology and biodiversity of shellfish reefs and biodiversity comparison against other marine habitats; • A scientific paper published in an eminent, peer-reviewed journal which identifies trajectories of change from past baselines to current condition and develops achievable targets for repair; • News stories, web articles, social media, brochures and oral presentations at national/international conferences, which communicate the key research findings to coastal stakeholders such as fishers, divers, NRM groups and government agencies; • News stories, web articles and social media which communicate the importance of shellfish reefs and shellfish food sources to Indigenous Australians; • Summary of community benefit and business propositions for coastal wetland repair expanding on the vision of a rejuvenated coastal ecology and written at the level required for input to various investors, agencies and public policy; • Updates at the end of 2016 as part of stakeholder engagement and continued communication. Salt marsh prawn productivity outputs: • A scientific paper published in an eminent, peer-reviewed journal quantifying and contrasting prawn productivity in healthy and degraded salt marsh communities in tropical and temperate environments; • Publicly accessible communication resources (brochures, social media, media releases and webpages) which articulate simply the prawn productivity values of salt marshes and links this to the need for the protection, conservation and restoration of degraded salt marsh communities.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A9 - "Grey Nurse Shark CK-MR Population Estimate – East Coast". For specific data outputs from this project, please see child records associated with this metadata. -------------------- A review of the 2002 National Recovery Plan for Grey Nurse Shark (DEWHA 2009) concluded it was not possible to determine if the east coast population had shown any signs of recovery (DoE 2014); recommending a new recovery plan be developed for this species. A primary objective of the new recovery plan (DoE 2014) is to improve knowledge of GNS population status. This will require a robust estimate of population size and trend – something that has not been provided to date. This project will use genetic SNP data to inform close kin-mark recapture analysis to estimate population size and trend, and provide guidance on future monitoring strategies for the east coast population of grey nurse shark. Planned Outputs • Tools to refine and integrate CK-MR and species demographic data for population assessments of a key threatened species at a national scale (combining knowledge developed under this project combined with similar techniques being applied under NESP to euryhaline sharks and white sharks). • A national estimate of (census) population size and trend for the eastern Australian population of grey nurse shark will be developed to fulfil the highest priority actions of the National Recovery Plan. • Identify national strategies to guide future monitoring of grey nurse shark populations. • The project will provide peer-reviewed additions to the scientific literature that will add to the science-support for the development and implementation of policies to support the ecologically sustainable management of Australia’s marine environment.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project D6 - "Socioeconomic benchmarks". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Social and economic values are key drivers for marine science and marine policy but are too rarely integrated with marine biodiversity monitoring programs. In close consultation with Parks Australia (PA) we will review existing metrics used to survey social and economic values associated with marine parks. This review will include consulting with national and international expertise and actively consulting with State and other Commonwealth agencies, some of whom are currently conducting reviews or have existing frameworks for surveying social and economic values (e.g Great Barrier Reef Marine Park Authority (GBRMPA), NSW Department of Primary Industries (DPI)). In collaboration with national partners and PA we will organise a national methods workshops to discuss and refine metrics and methods to quantify social and economic benchmarks for State and Australian Marine Parks (AMPs) and produce Standard Operating Procedure’s (SOP) relevant to AMPs taking into consideration the Department of the Environment and Energy’s (DoEE’s) environmental accounting processes and PA’s Monitoring, Evaluation, Reporting and Improvement (MERI) framework. Planned Outputs • SOP for measuring social and economic metrics for AMPs • Final report on essential (key) AMP social and economic metrics • Summaries of research and surveys made available through the Marine Parks Science Atlas