We evaluate the status of shellfish reef ecosystems in Australia including their historical distribution and loss, regulation and management and identify current research priorities, policies and conservation mechanisms that can enable their future protection and repair. Eight species of shellfish were identified as developing complex, three-dimensional reef systems over large scales in intertidal and subtidal areas across tropical, subtropical and temperate Australia. A dramatic decline in the extent and condition of Australia’s shellfish reef ecosystems occurred during the mid-1800s to early 1900s in concurrence with extensive harvesting for food and lime production, habitat modification, disease outbreaks and a decline in water quality. Despite early attempts during the late 1800s to curb over exploitation and repair degraded reefs through protection, primitive aquaculture and enhancement, living examples of shellfish reefs are now rare. Only one Ostrea angasi reef is known to exist that is comparable in size to reefs historically commercially fished, compared to at least 118 previously known locations. Out of the 60 historically fished locations identified for Saccostrea glomerata, only five are known to still contain commercially harvestable sized reefs. The introduced oyster Crasostrea gigas is increasing in reef extent, whilst data on the remaining five reef-building species is limited, preventing a detailed assessment of their current status. Our knowledge of the extent, physical characteristics, biodiversity and ecosystem services of natural shellfish reefs in Australia is extremely limited. Australia is well equipped to reverse the decline of shellfish reef ecosystems with a number of state and federal protection laws, international conventions and management mechanisms already in place, all of which can be used to help protect remaining reefs and aid in future recovery. Several restoration projects have recently begun as awareness of historical loss grows amongst the community and groups become motivated to implement repair. As momentum continues to grow, Australia could serve as a long-term model for other regions that may currently have limited understanding of their shellfish reefs ecosystems but wish to work towards their future conservation. Data to be made publicly available with publication of manuscript by end 2018.

Time Series video to support Project C3 of the Marine Biodiversity Hub NESP programme. The video illustrates coastal change at the Murray Mouth and Lower Lakes, SA using 104 Landsat observations from within the Australian Geoscience Data Cube (AGDC) from 1988-2013.

Between 2009-2012, Geoscience Australia conducted three surveys to Joseph Bonaparte Gulf and the Timor Sea on the R.V. Solander, in collaboration with the Australian Institute of Science and the Museum and Art Gallery of the Northern Territory. The study areas overlapped the Oceanic Shoals Commonwealth Marine Reserve and the carbonate banks and terraces within it. The surveys were conducted as part of the Australian Government's Energy Security Program (2007-2011) and the National Environment Research Program (2011-2015). On the surveys, a benthic sled was deployed to collect biological samples from the seafloor. Samples were sorted onboard according to phylum, photographed and then sent to taxonomists for species-level identifications. This catalogue includes all onboard photographs taken from identified samples. Sponges were the only group of which all samples were identified, but they include high proportions of unnamed or undescribed species. The catalogue also includes taxonomic identification sheets so that users can cross-reference the species names and images with location and depth.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including the Capes region of southwest Western Australia. The area is one of the most diverse temperate marine environments in Australia. Warm, tropical waters of the Leeuwin Current mingle with the cool waters of the Capes Current, resulting in high finfish diversity, including tropical and temperate species, as well as internationally significant seagrass diversity with meadows occurring at depths greater than 40 metres. The region's geomorphology is complex with an array of intertidal and subtidal reef environments. Many marine plants and animals are endemic to the southern coast of Australia due to its long geographical isolation, with seagrass, algae and estuarine habitats functioning as spawning, nursery and feeding grounds for a wide range of invertebrates and fish. Significant numbers of marine mammals also frequent the area, including the blue whale, the largest of all marine creatures.

Time Series video to support Project C3 of the Marine Biodiversity Hub NESP programme 2015/2016. The video illustrates coastal change at the Southern end of Stradbroke Island QLD, using 118 Landsat observations from within the Australian Geoscience Data Cube (AGDC) from 1987-2016.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including the Abrolhos Islands, a group of 122 limestone outcrops surrounded by fringing reed ca. 60km west from the city of Geraldton. The Abrolhos research location is the most northerly of the Marine Futures sampling sites, selected due to the unique mixture of tropical coral reef habitats, and temperate reef and seagrass communities.The hydroacoustics data were processed to construct full coverage maps of bathymetry and textural information.

This record provides an overview of the scope and research output of the NESP Marine Biodiversity Hub project "Underpinning the repair and conservation of Australia’s threatened coastal-marine habitats". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The primary objective of this project is to provide essential research to underpin restoration efforts to increase the success and efficiency of shellfish and saltmarsh repair. The secondary objective is to quantify clear easily understood benefits of repair to further increase groundswell, Indigenous and interest group support for repair efforts. For Phase 2 this involves: Shellfish reefs 1. Providing critical research to underpin the success of companion works investments into Sydney rock oyster (Saccostrea glomerata) restoration in Qld and NSW 2. Ongoing engagement with Indigenous groups, focused around especially SEQ and NSW to match the emphasis on Sydney rock oyster; 3. Through the Nature Conservancy, linking to shellfish restoration works in Port Phillip Bay (Vic), St Vincent’s Gulf (SA) and Oyster Harbour (WA) so that a National Business Case complete with examples of successes to date can be developed; 4. Underpinning this succinct business case with an information base for any follow-on activities such as assessment of shellfish reefs as an endangered community. Salt marshes 1. Estimating the benefits of salt marsh repair for an easily publicly understood indicator - prawn species. 2. Undertaking this work in NSW and Qld in parallel with proposed repair works so that very concrete case studies are available to demonstrate the benefits of repair. Planned Outputs Shellfish reef project outputs: • A scientific paper published in an eminent, peer-reviewed journal describing the ecology and biodiversity of shellfish reefs and biodiversity comparison against other marine habitats; • A scientific paper published in an eminent, peer-reviewed journal which identifies trajectories of change from past baselines to current condition and develops achievable targets for repair; • News stories, web articles, social media, brochures and oral presentations at national/international conferences, which communicate the key research findings to coastal stakeholders such as fishers, divers, NRM groups and government agencies; • News stories, web articles and social media which communicate the importance of shellfish reefs and shellfish food sources to Indigenous Australians; • Summary of community benefit and business propositions for coastal wetland repair expanding on the vision of a rejuvenated coastal ecology and written at the level required for input to various investors, agencies and public policy; • Updates at the end of 2016 as part of stakeholder engagement and continued communication. Salt marsh prawn productivity outputs: • A scientific paper published in an eminent, peer-reviewed journal quantifying and contrasting prawn productivity in healthy and degraded salt marsh communities in tropical and temperate environments; • Publicly accessible communication resources (brochures, social media, media releases and webpages) which articulate simply the prawn productivity values of salt marshes and links this to the need for the protection, conservation and restoration of degraded salt marsh communities.