This record provides an overview of the NESP Marine and Coastal Hub bridging study - "Future-proofing restoration & thermal physiology of kelp". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Kelp forests create complex habitats that support a diverse and productive community of marine life. They underpin coastal food-webs, fisheries, and a suite of other ecosystem services including nutrient and blue carbon cycling. Across much of the world, kelp forests are in decline and under threat from stressors including urbanisation, overgrazing, ocean warming, and marine heatwaves driven by climate change. Australia’s giant kelp (Macrocystis pyrifera) forests are listed as a Threatened Ecological Community under the Environment Protection and Biodiversity Conservation Act 1999. Habitat restoration is a potential tool for the conservation and management of giant kelp ecosystems. Given the direct impacts of climate change and ocean warming, there is growing recognition of the need for habitat restoration to be ‘future proofed’. For restoration to be effective, the cause of habitat decline must be understood and overcome. This is problematic when climate change is driving habitat loss since it cannot be reversed or ameliorated prior to restoration. A previous NESP project led by this team (Project E7, Marine Biodiversity Hub) identified warm-tolerant strains of giant kelp from remnant patches in eastern Tasmania, where the species has experienced precipitous declines due to ocean-warming. These strains have high potential to assist with ‘future-proofing’ kelp forest restoration, however it is still unclear what the physiological mechanisms are that provide their improved thermal tolerance. It is also unknown whether cross-breeding the identified warm-tolerant giant kelp strains will affect and potentially improve their thermal tolerance capacity. This project explored the physiology of kelp thermal performance, specifically the mechanisms potentially responsible for the warm water tolerance identified in particular giant kelp strains. It confirmed the improved ability of the warm-tolerant strains to develop at stressful warm temperatures relative to normal giant kelp, and demonstrated for the first time that their improved thermal performance may extend to the development and fertilisation. The outcomes progress toward the identification of populations of Australian kelp that may be resilient to (or especially threatened by) ocean warming and climate change. Outputs • Ecophysiological measurements from laboratory experiments of warm-tolerant vs average giant kelp genotypes [dataset] • Final Project Report including a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the NESP Marine and Coastal Hub bridging study - "Aerial survey of the Southern Right Whale ‘western’ sub-population off southern Australia". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Aerial surveys of Southern Right Whales have been conducted across the southern Australian coast from Perth, WA to Ceduna, SA since 1993, as part of a long-term program to monitor their recovery. The surveys data provide a long-term population trend for this ‘western’ population, and provide an understanding of connectivity with the ‘eastern’ population as part of a national population assessment. The NESP Marine Biodiversity Hub funded the aerial surveys in 2015–2020 and the Marine and Coastal Hub funded the survey in 2021. (See Project 1.26: https://catalogue.aodn.org.au/geonetwork/srv/eng/catalog.search#/metadata/b85b2c7d-4631-477a-9217-2cae65f9cf0a) The 2022 survey ensures an uninterrupted time series in the long-term population trend data for this Endangered species. This is particularly important given the non-annual breeding cycle (typically every three years), such that annual surveys are essential to maintain an acceptable level of precision in estimating population trends and key life history parameters (calving intervals) to track the recovery of the species. Continued monitoring of the population is needed to evaluate whether there is a longer term and continuous change (in population size and calving intervals) in the population as indicated by recent sightings and population trend data. Outputs • Estimate of relative abundance and population trend compared to long-term aerial survey sightings [dataset] • Individual whale photo-identification data - 2021-22 season [imagery - published to ARWPIC] • Final technical report detailing overall numbers of southern right whales observed within the survey region, their gender (and life stage where possible) and spatial distribution of individuals [written]

This record provides an overview of the NESP Marine and Coastal Hub project "Updating knowledge of Australian white sharks". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The white shark is listed as vulnerable and migratory under Australia’s Environment Protection and Biodiversity Conservation Act 1999. The national White Shark Recovery Plan 2013 sets out research and management actions necessary to support the recovery of the white shark in Australian waters. Previous research funded by the National Environmental Science Program (NESP) provided updated estimates of white shark breeding population size and trend. However, the results were based on modest data sets and were limited by some critical knowledge gaps in relation to pupping and juvenile nursery areas, and uncertainty about how populations are connected between eastern and south-western Australia. Recent unpublished work has raised the prospect of a single Australian population. The White Shark Recovery Plan 2013 has identified a critical need for a quantitative assessment of population trends and evidence of any recovery of the white shark in Australian waters. This project will provide an update and reduce uncertainty regarding the status, trends, and population structure of white sharks in Australian waters. Specifically, it will focus efforts to identify critical habitats and biologically important areas for white sharks and improve the understanding of population status through advancing close-kin mark recapture research. Three project sub-components will involve: • Investigating the feasibility of filling knowledge gaps about juvenile and pupping areas and adult movements; • Investigating population structure to resolve mixing/connectivity questions; and • Updating population estimates based on significant new data. The project approach will comprise of: (1) A pilot study to assess the effectiveness of tagging adult females (>4.5 metres) and juveniles (>2 m) throughout the southern-western white shark range. Genetic samples will be gathered from around Australia and sought from South Africa and New Zealand to conduct a comprehensive update of white shark stock structure. (2) Using an expanded tissue sample set from New South Wales (~1000 samples) to update and refine estimates of adult population size and population trend for the eastern white shark population. Juvenile numbers will be estimated using data from the New South Wales shark management program. Additional samples from South Australia and Western Australia will be combined with previous samples in the southern-western population to refine estimates of population size. (3) Population estimates undertaken using close-kin mark-recapture, a technique that combines advanced genetics and statistical modelling to infer population demographics by identifying close-kin-pairs (parent-offspring or half-siblings) among a collection of sampled animals. Outputs • New genetic samples and sequencing data for white sharks [dataset] • Tracking data derived from 12 PAT tags [dataset] • Final technical report (including recommendations for systematic future research to assist in identifying additional critical habitat for the south-western white shark population) [written]

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A12 - "Scoping a seascape approach to managing and recovering Northern Australian threatened and migratory marine species". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Northern Australia is the current focus of substantial economic development, which has the potential to impact biodiversity and cultural values. The Northern Seascape scoping project will assess the status of knowledge of EPBC-listed Threatened and Migratory Marine species, and pressures, Indigenous priorities, habitats, fisheries bycatch, and EPBC referrals in relation to them across the North Marine Bioregion (coast to EEZ edge). The focus will be at the multiple taxa level, including elasmobranchs, shorebirds, turtles and cetaceans. The project will scope research needs and directions for a broad Northern Seascape project (2018–2020), by identifying future research hotspots. Planned Outputs • Maps of Threatened and Migratory Marine species occurrence and habitats, and a gap analysis of research and data needs • Maps of state and trends in pressures and Threatened and Migratory Marine species, and the intersection between them • A report on Indigenous marine research and management priorities for Threatened and Migratory Marine species • Maps and time-series graphs that depict the extent and timing of past changes in coastal habitats that are important for TMM species • Identification of Threatened and Migratory Marine species bycatch and bycatch mitigation research priorities • Identification of EPBC referral spatial and species trends • Data, data visualisation and summaries available online through an appropriate web-based portal and/or existing internal DoEE information products • Project report synthesizing northern Australian Threatened and Migratory Marine species, pressures, Indigenous priorities, coastal habitat change, fisheries bycatch mitigation research priorities, and EPBC referral trends, and the identification of future research hotspots

This record provides an overview of the NESP Marine and Coastal Hub scoping study - "Research needs for assessment and monitoring of nutrients, chemicals and antimicrobials in the marine environment". No data outputs were generated by this project. -------------------- Coastal water quality is threatened by an increasing volume of chemicals produced and used in our modern lives. These chemicals are commonly incorporated into pharmaceuticals and household items, and subsequently discharged into coastal areas from a broad range of point sources. Recently emerging contaminants include a variety of chemical (e.g. heavy metals, pharmaceuticals, pesticides, nutrients) and microbiological (e.g. pathogens, antibiotic resistant microbes) sources that are discharged in sewage, stormwater, estuarine flows and industrial wastes. For many of these chemicals, our understanding of their environmental concentrations and biological effects is limited. When new scientific information emerges to suggest that a particular contaminant may be hazardous, this is refered to as a contaminant of emerging concern (CEC). There is limited data about the environmental occurrence and biological effects of CECs, but emerging research suggests they have the capacity to be toxic. With an increasing list of CECs detected in the environment, important questions remain unanswered around which contaminants and scientific knowledge gaps should be prioritised. This desktop study engaged CEC stakeholders from academic research, government, water utilities, and non-government organisations to collaboratively identify priority CEC issues in Australia’s marine ecosystems. The project delivers a risk-based framework for future CEC research directions and water quality management priorities. Outputs • Final Project Report [written]

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project 3.7 – Identifying and overcoming barriers to coastal and marine habitat restoration and Nature based Solutions in Australia. All outputs of this project are written (i.e. no data outputs). -------------------- There is an increasing need for and investment in coastal and marine restoration around Australia to help manage habitat and biodiversity loss, water quality, coastal inundation and erosion, and blue carbon assets. These projects are undertaken by a range of Commonwealth, state and local government agencies, NGOs, and community groups, and range across different habitat types and scale. However, a number of barriers currently preclude widespread uptake and implementation of habitat restoration and nature-based solutions (NbS) in Australia, which centre on: 1) policy and legislative barriers; 2) engineering adoption of NbS; and 3) Aboriginal and Torres Strait Islander inclusion and co-design. Overcoming barriers to marine and coastal restoration, and Nature-based Solutions (NbS) adoption is critical to safeguarding Australia’s marine estate. We focus this research on three thematic areas that represent roadblocks and opportunities for more inclusion in implementing and scaling-up restoration and NbS: 1. Engaging policy and permitting regulators to identify and breakdown barriers for marine and coastal habitat restoration; 2. Understanding and up-take of NbS by the engineering sector; and 3. Inclusion of Aboriginal and Torres Strait Islanders in restoration and NbS This research was conducted through in person and virtual workshops, with the outcome being advancement of effective approaches to overcome these challenges. Outputs • Identifying and overcoming barriers to marine and coastal habitat restoration and nature-based solutions in Australia [project summary - written] • A blueprint for overcoming barriers to the use of nature-based coastal protection in Australia [written] • Legislative permitting processes for restoration [written] • Pathways to Aboriginal and Torres Strait Islander inclusion and co-design in restoration [written]

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Synthesis Study - "National trends in coral species following heatwaves". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project engaged coral taxonomic experts to annotate existing Reef Life Survey (RLS) photoquadrats taken across northern Australia before and after major disturbances, to allow: • Quantification of the spatial and species-level responses of Australian corals to the 2016 and 2017 marine heatwave and mass bleaching events (and cyclones that occurred during this period). • Identification of the species most threatened by warming and cyclones, and species likely to respond best to restoration efforts. • Contribution to a coral-specific analysis to the next national State of the Environment report. Planned Outputs • Dataset on % cover of corals to highest taxonomic resolution possible from surveys around northern Australia before and after the 2016 mass bleaching event.

This record provides an overview of the NESP Marine and Coastal Hub project "Mapping critical Australian sea lion habitat to assess ecological value and risks to population recovery". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Populations of the endangered Australian sea lion have declined by >60% over the last 40 years. There is a marked uneven distribution in abundance and trends across the species range, suggesting that localised risk profiles from threats vary at small spatial scales. Fine scale differences in habitat use are thought to underpin these differences, yet knowledge about the species dependency on key habitats and their vulnerability to human impacts is limited. This project deployed underwater cameras onto sea lions to identify and map their critical habitats, assess their ecological value and identify risks to populations. Tagging took place at three sea lion colonies adjacent to Commonwealth and state marine reserves off South Australia including Olive and Pearson Islands (Western Eyre Marine Park) and Seal Bay (Southern Kangaroo Island Marine Park). Results from this study improve our understanding of threats to sea lion populations and support future conservation actions to recover the species. Outputs • Tracking data from sea lion-deployed tags: location, depth, time, temperature, light, acceleration [dataset] • Timestamped video footage from sea lion-deployed cameras [dataset] • Final project report [written]

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B3 - "Enhancing access to relevant marine information –developing a service for searching, aggregating and filtering collections of linked open marine data". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project aims to improve the searchability and delivery of sources of linked open data, and to provide the ability to forward collections of discovered data to web services for subsequent processing through the development of a linked open data search tool. This work will improve access to existing data collections, and facilitate the development of new applications by acting as an aggregator of links to streams of marine data. The work will benefit managers (i.e. Department of the Environment staff) by providing fast and simple access to a wide range of marine information products, and offering a means of quickly synthesizing and aggregating multiple sources of information. Planned Outputs • Delivery of open source code to perform the search functions described above. • A simple initial web interface for performing the search and retrieval of results. • Expanded collections of data holdings available in linked open format, including the use of semantic mark-up to enable fully-automated data aggregation and web services. In particular, addition of linked-open data capability to a pilot collection of existing data sets (GA, CERF and NERP data sets).

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A1 - "Northern Australian hotspots for the recovery of threatened euryhaline species". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Euryhaline elasmobranchs represent over half of the EPBC-listed threatened sharks and rays, with northern Australia of national importance for this threatened species community. Critical information gaps remain, limiting the implementation of Recovery Plan objectives. This project will fill many data gaps through the application of acoustic telemetry, traditional and advanced molecular research (population genetics and close-kin mark-recapture), life history studies and Indigenous knowledge and education. End-users, primarily the Department of the Environment, state and territory fisheries and wildlife agencies, and Indigenous organisations, will be provided with information necessary to improve management and facilitate recovery of these threatened species, focusing on three themes: (1) Monitoring and understanding euryhaline species; (2) Indigenous partnerships for management of euryhaline species, and; (3) Knowledge for the reassessment of river shark status. Planned Outputs • Updated assessment of river shark status • Manuscripts on ecology and status relevant to the management of threatened euryhaline species • Manuscripts on optimal design of acoustic receiver arrays and statistical methods for estimating mortality • Threatened marine species education package for Indigenous communities • Media releases around key field and engagement activities • Data and information outputs of this project will include distribution, extent of occurrence and area of occupancy estimates for key marine species, Indigenous knowledge on key species distribution and occurrence, mortality and survivorship data on key species, the first data on river shark age determination (an essential component of understanding demography), molecular data on population structure and population connectivity of key species, and lower population size estimate for Glyphis garricki. Data will be housed on appropriate explorable databases and made fully available to DOE • Refining the identification of biologically important areas (BIAs) within the NT and WA for threatened euryhaline elasmobranchs (using published BIA protocols)