This record provides an overview of the scope and research output of the NESP Marine Biodiversity Hub project "A pilot service for searching, aggregating and filtering collections of linked open marine data". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project aims to improve the searchability and delivery of sources of linked open data, and to provide the ability to forward collections of discovered data to web services for subsequent processing through the development of a linked open data search tool. This work will improve access to existing data collections, and facilitate the development of new applications by acting as an aggregator of links to streams of marine data. The work will benefit managers (i.e. Department of the Environment staff) by providing fast and simple access to a wide range of marine information products, and offering a means of quickly synthesizing and aggregating multiple sources of information. Planned Outputs • Delivery of open source code to perform the search functions described above. • A simple initial web interface for performing the search and retrieval of results. • Expanded collections of data holdings available in linked open format, including the use of semantic mark-up to enable fully-automated data aggregation and web services. In particular, addition of linked-open data capability to a pilot collection of existing data sets (GA, CERF and NERP data sets).

This record provides an overview of the scope and research output of the NESP Marine Biodiversity Hub project "Northern Australian hotspots for the recovery of threatened euryhaline species". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Euryhaline elasmobranchs represent over half of the EPBC-listed threatened sharks and rays, with northern Australia of national importance for this threatened species community. Critical information gaps related to population status, movement, mortality, habitat use and life history have constrained implementation of recovery objectives. The project used acoustic telemetry, molecular research, life history studies, Indigenous knowledge and education to improve understanding of threatened euryhaline sharks and rays across northern Australian rivers and estuaries. Research activities included monitoring tagged animals to estimate movement patterns, habitat use and mortality; collecting tissue samples to investigate population structure and support close-kin mark-recapture analysis; and synthesising existing Marine Biodiversity Hub research to identify biologically important areas and recovery priorities. The project was undertaken in partnership with Indigenous organisations, communities and ranger groups to support sawfish monitoring, cultural knowledge sharing and education. The project provided information to support management, recovery planning and reassessment of river shark conservation status for Australian Government, state and territory agencies, fisheries managers, and northern Indigenous organisations.

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Delineation and estimation of the Maugean skate population in Macquarie Harbour, Tasmania". No public data outputs are planned for this project. -------------------- The Maugean skate (Zearaja maugeana) is now only found in Macquarie Harbour on Tasmania’s west coast, which has a long history of environmental degradation. The species is listed as Endangered under Commonwealth and Tasmanian legislation, and its restricted distribution, small population size, and exposure to degraded environmental conditions make population monitoring a high conservation priority. Recent research suggests that the Macquarie Harbour population may be declining. However, existing abundance estimation methods are inadequate because the species is cryptic, capture-based methods pose risks to skate health, and conventional optical surveys are limited by the harbour’s shallow, stratified, and highly turbid conditions. This project developed and tested new approaches to estimate and monitor the Maugean skate population using next-generation genetic sequencing and novel imaging technologies. Non-invasive acoustic methods (adaptive resolution imaging sonar (ARIS), synthetic aperture sonar, performed better than optical approaches (LiDAR, conventional video), under Macquarie Harbour conditions. ARIS was identified as the most suitable image-based monitoring tool for future population surveys. The genetic component generated the first reference-quality whole and mitochondrial genomes for the species and sequenced samples from 162 individuals. Genome-wide single nucleotide polymorphism (SNP) analyses showed that the Macquarie Harbour population has very low genetic diversity, which may influence how genetic risks are interpreted in recovery planning. The project produced new monitoring methodologies, genomic reference resources, and population genetic datasets to support future monitoring of Maugean skate abundance, population structure, and genetic health. The findings will inform conservation planning and evaluation of recovery strategies including captive breeding, translocation, and long-term genetic monitoring under changing environmental conditions. Outputs • Tissue sampling results and genome-wide population genetic structure [dataset] • Final project report [written]

This record provides an overview of the NESP Marine and Coastal Hub emerging priorities study - "Application of environmental DNA to survey Bathurst Harbour Tasmania for the endangered Maugean skate". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The Maugean skate (Zearaja maugeana) is listed as Endangered under Tasmania’s Threatened Species Protection Act and the Commonwealth Environmental Protection and Biodiversity Conservation Act 1999. Its known population is small (~3,000 individuals, Macquarie Harbour, 2016) and highly restricted, having only been recorded in two isolated estuaries: Bathurst Harbour and Macquarie Harbour in south-western/western Tasmania. This constitutes one of the most limited distributions of any known extant elasmobranch. Although the skate was first discovered in Bathurst Harbour, most knowledge of the species stems from the Macquarie Harbour population. Only four individuals have been reported in Bathurst Harbour, with the last reported sighting in 1992. Environmental conditions in Macquarie Harbour have changed markedly since then due to anthropogenic activities in and around the estuary including historical mining, hydro-electric generation and alteration of natural river flows, and marine fish farming. Previous research has shown clear signs of population stress and evidence of detrimental impacts of degraded environmental conditions on the Maugean Skate in Macquarie Harbour. Understanding the potential population status of the Maugean Skate in Bathurst Harbour will assist in determining conservation actions. This study used Environmental (e) DNA to determine the presence/absence of Maugean skate in Bathurst Harbour, strengthening the evidence base for effective conservation plans and specific recovery actions. Outputs • Maugean skate eDNA sampling data and inferred species distribution (presence/absence) [dataset] • Final Project Report, including a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the scope and research data outputs of the NESP Marine Biodiversity Hub Synthesis Study "Interpreting pressure profiles". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project has two objectives: (i) provide a spatial explicit analysis of the relative risks posed to marine conservation values, as defined by the natural values hierarchy of Parks Australia's Monitoring, Evaluation, Reporting and Improvement (MERI) framework, by pressures that operate within Australia's Exclusive Economic Zone and state/territory waters (a "hotspot" analysis); and, (ii) provide a proof of concept of an adaptive, probabilistic assessment of the cumulative risks posed to these values, in a region determined to support the Parks Australia MERI project D7, in a manner that is consistent with the seascape-scale cumulative assessment described in the "Guidelines for analysis of cumulative impacts and risks to the Great Barrier Reef". Planned Outputs • National hotspot maps of risks posed to marine conservation values • Probabilistic assessment (written) of cumulative risks

This record provides an overview of the scope and research data outputs of the NESP Marine Biodiversity Hub Synthesis Study "National trends in coral species following heatwaves". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project engaged coral taxonomic experts to annotate existing Reef Life Survey (RLS) photoquadrats taken across northern Australia before and after major disturbances, to allow: • Quantification of the spatial and species-level responses of Australian corals to the 2016 and 2017 marine heatwave and mass bleaching events (and cyclones that occurred during this period). • Identification of the species most threatened by warming and cyclones, and species likely to respond best to restoration efforts. • Contribution to a coral-specific analysis to the next national State of the Environment report. Planned Outputs • Dataset on % cover of corals to highest taxonomic resolution possible from surveys around northern Australia before and after the 2016 mass bleaching event.

This record provides an overview of the NESP Marine and Coastal Hub scoping study - "Research needs for assessment and monitoring of nutrients, chemicals and antimicrobials in the marine environment". No data outputs were generated by this project. -------------------- Coastal water quality is threatened by an increasing volume of chemicals produced and used in our modern lives. These chemicals are commonly incorporated into pharmaceuticals and household items, and subsequently discharged into coastal areas from a broad range of point sources. Recently emerging contaminants include a variety of chemical (e.g. heavy metals, pharmaceuticals, pesticides, nutrients) and microbiological (e.g. pathogens, antibiotic resistant microbes) sources that are discharged in sewage, stormwater, estuarine flows and industrial wastes. For many of these chemicals, our understanding of their environmental concentrations and biological effects is limited. When new scientific information emerges to suggest that a particular contaminant may be hazardous, this is refered to as a contaminant of emerging concern (CEC). There is limited data about the environmental occurrence and biological effects of CECs, but emerging research suggests they have the capacity to be toxic. With an increasing list of CECs detected in the environment, important questions remain unanswered around which contaminants and scientific knowledge gaps should be prioritised. This desktop study engaged CEC stakeholders from academic research, government, water utilities, and non-government organisations to collaboratively identify priority CEC issues in Australia’s marine ecosystems. The project delivers a risk-based framework for future CEC research directions and water quality management priorities. Outputs • Final Project Report [written]

This record provides an overview of the scope and research output of the NESP Marine Biodiversity Hub project "Conservation of handfish and their habitat". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Spotted Handfish (Brachionichthys hirsutus) and Red Handfish (Thymichthys politus) are Critically Endangered species with small, fragmented populations in southern Tasmania. Spotted Handfish persist only in isolated sub-populations in the Derwent and D’Entrecasteaux estuaries, where recovery is constrained by limited dispersal, specific spawning habitat requirements, degraded habitat, introduced predators, pollution, mooring impacts and coastal development. This project established and extended a monitoring and conservation program for Spotted and Red Handfish in accordance with the Handfish Recovery Plan. For Spotted Handfish, it built on baseline surveys of all known southern Tasmanian sub-populations and applied an innovative georeferenced photographic survey method using towed floats, GPS tracking and individual spot-pattern identification. These data supported density estimates, capture-mark-recapture analysis, assessment of movement between sub-populations, and tracking of conservation actions. From 2019–2020, the project expanded to include Red Handfish and implemented direct conservation actions informed by monitoring and research. Activities included replacement of degraded plastic artificial spawning habitat with redesigned ceramic units, assessment of taut eco-friendly moorings in critical Spotted Handfish habitat, genetic and capture-mark-recapture studies for both species, population viability analysis, and evaluation of management actions. The project also supported captive breeding with industry partners, re-established the Handfish Recovery Team, and contributed to community engagement through talks, outreach and publications. Outputs provided data and evidence to guide artificial spawning habitat placement, brood-stock collection decisions, predator management, mooring replacement, and future recovery planning for both species.

This record provides an overview of the NESP Marine and Coastal Hub bridging study - "Support for Parks Australia’s Monitoring, Evaluation, Reporting and Improvement System for Australian Marine Parks". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The system of marine parks that spans Australia’s Commonwealth waters is among the largest in the world. These parks play a major role in conserving marine life, supporting commercial and recreational activities, and protecting cultural values significant to Aboriginal and Torres Strait Islander peoples. Parks Australia has developed management plans for five regional Australian Marine Park (AMP) networks (North, North-west, South-west, South-east and Temperate East) and the Coral Sea Marine Park (CSMP). Under each management plan, a science plan sets priorities for monitoring and research to evaluate management effectiveness and identify opportunities for improvement. This prioritisation is vital given the limited knowledge across many AMPs, the technical challenges and high costs of science in remote areas, and the finite resources available for park management. Building on foundational work from the NESP Marine Biodiversity Hub (projects SS2 and D7), this project delivered the scientific and technical advice needed to establish monitoring priorities for natural values and pressures across all AMP networks and the CSMP—completing a full national priority list for monitoring. It applied a nationally consistent four-step prioritisation framework that considered ecological importance, vulnerability to pressures, baseline data availability, and logistical feasibility. The project also updated the National Ecosystem model and Pressures & Activities datasets, conducted expert vulnerability assessments, and produced a Relative Cumulative Impact index. The combined research delivers a nationally accepted "common language" to describe natural values and pressures and a science-based method to derive monitoring priorities, aligned with the Monitoring, Evaluation, Reporting and Improvement (MERI) system—an adaptive management framework that is globally unique and a significant step towards adaptive, integrated, place-based management. Key outputs include a national database of environmental and human-use data for each management region and a refined list of monitoring priorities for each AMP Network and the CSMP. The findings highlight major knowledge gaps—particularly in the distribution of mesophotic and rariphotic reefs, intertidal ecosystems, and recreational fishing impacts—and provide guidance for improving baseline data and pressure assessments. The prioritisation framework and data products developed through this project can be re-generated over time alongside improvements in the evidence base and our understanding of how ecosystems respond to multi-sectoral activities to support continual improvement in iterative, evidence-based park management and environmental outcomes. Outputs • Digital map layers per AMP network of: (1) Ecosystems; (2) Pressures & Activities; and (3) Cumulative Benthic & Pelagic Impacts • Final Technical Report containing maps of Key Natural Values, and of spatial Monitoring Priorities, including a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the NESP Marine and Coastal Hub small-scale study - "Australia’s Coastal Shorebirds: Trends and Prospects". No data outputs were generated by this project. -------------------- Coastal Australia is home to 37 regularly occurring migratory shorebird species, with many protected areas including Ramsar sites designated on the basis of shorebird populations. Many migratory shorebirds are declining rapidly, and hence the focus of conservation efforts at multiple levels of government in Australia and overseas. However, trend data are now nearly 10 years old, meaning the information available to assess where conservation actions are needed most urgently and whether conservation efforts are helping species recover are outdated. To ensure populations have the best chance at recovery and that resources are allocated where they are most likely to have the greatest positive impacts, it is critical to maintain up-to-date information on species trends. This project analysed 30 years of shorebird monitoring data collected by citizen science groups across Australia and curated by BirdLife Australia’s National Shorebird Monitoring Program to update national trend estimates, while also assessing the relative effects of human pressure and conservation efforts on population trends. In particular, it focused on 15 migratory shorebird species whose conservation status was being reassessed by the Australian Department of Climate Change, Energy, the Environment and Water. This project sets the stage for building the next decade of coastal shorebird conservation activity in Australia, coordinated through the national mechanism of the End User: National Migratory Shorebird Conservation Action Plan Steering Committee, with representatives from national and state governments as well as leading shorebird experts. Outputs • Fact Sheet on Australia's coastal shorebird trends and prospects [written] • Final Project Report, including a short summary of recommendations for policy makers of key findings [written]