2018
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Observational data for the Kelp Ecosystem Ecology Network. These data come from transects of rocky reefs taken around the world using the KEEN observational data protocol (see http://kelpecosystems.org for full description of methods and handbook). See “How” for methods. Briefly, the observational data consists of the following components, all included here: site information, fish observations, quadrat sampling, band transect sampling, percent cover from uniform point counts, and kelp morphometrics. Data Files Data files included and what they contain are as follows: keen_sites.csv - Physical and locational data for all KEEN sites and transect. keen_cover.csv - Percent cover of sessile algae and invertebrates. keen_fish.csv - Counts of fish by size class along a transect. keen_quads.csv - Counts of common algae, sessile invertebrates, and demersal fish that can be individuated. keen_swath.csv - Counts of rarer algae, sessile invertebrates, and demersal fish that can be individuated. Data Use To use the observational data here for published work we ask that 1) You contact the network coordinator, jarrett.byrnes@umb.edu, and notify them of your intention so that we can coordinate among any ongoing projects using the same data, 2) if the data has not been used in a publication in the literature before, we request that you reach out to the PIs responsible for the data you will be using and engage in a conversation about co-authorship, 3) if it has been used previously, merely cite the datasets associated with each PI that you use. The references are listed below. For access to the entire data cleaning and processing pipeline, see https://github.com/kelpecosystems/observational_data. For access to scans of the original data sheets, contact jarrett.byrnes@umb.edu. ------------------------------------------------------ For general methods: Byrnes, Jarrett E.K., Haupt, Alison J., Reed, Daniel C., Wernberg, Thomas., Pérez-Matus, Alejandro., Shears, Nick T., Konar, Brenda, Gagnon, Pat, and Vergés, Adriana. 2014. Kelp Ecosystem Ecology Network Monitoring Handbook. Kelp Ecosystem Ecology Network. For specific data sets, use the following, but also include date the data is accessed from this record in order to track the data version used. Byrnes, Jarrett E.K., Haupt, Alison J., Lyman, Ted. 2014. Kelp forest communities at Appledore Island, the Boston Harbor Islands, and Salem Sound. Kelp Ecosystem Ecology Network. Dijkstra, Jennifer A., Mello, Kristen. 2015. Kelp forest communities at York, Maine. Kelp Ecosystem Ecology Network. Grabwoski, Jonathan and MacMahan, Marissa. 2015. Kelp forest communities in Nahant, Massachusetts, and Pemaquid, Maine. Kelp Ecosystem Ecology Network. Humphries Austin T., Paight C, Ben-Horin Tal, Green Lindsay, Thornber, Carol. 2016. Kelp forest communities in Narragansett Bay, Rhode Island. Kelp Ecosystem Ecology Network. Rasher, Douglass and Price, Nicole. 2017. Kelp forest communities of central and downeast Maine. Kelp Ecosystem Ecology Network. Peréz-Matus, Alejandro and Shaughnessy, Brianna. 2017. Kelp forest communities of central and northern Chile. Kelp Ecosystem Ecology Network.
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Of the ~80 EPBC-listed Threatened and Migratory marine species known to occur in the North Marine Bioregion, 16 were identified as priority species through consultation with research end-users and experts. The priority group consisted of three sawfishes, two river sharks, Dugong, two inshore dolphins, six shorebirds and two turtles. Dwarf and then Green Sawfish had the most data gaps, indicating that these were the most poorly-known of the selected priority species in the North Marine Bioregion, and as such are a priority for research. These were followed (in order of data gaps) by the other river sharks and sawfishes, inshore dolphins, Hawksbill Turtle, Dugong, Olive Ridley Turtle, and shorebirds. Research assessing the relevance and impact of pressures was identified as a gap for all species. New data identified during the project can fill data gaps for all 16 species, and the analysis of these datasets can improve the accuracy of distribution maps, but new data collection is still required for all sharks and sawfishes, Hawksbill Turtle, and inshore dolphins to improve data coverage for distribution modelling and mapping. Phase 1 of the project involved a gap analysis with identified numerous new datasets, both published and unpublished, that are currently not incorporated into SPRAT profiles and distributions (see Table 5). This provided an opportunity to begin compiling and analysing this information to fill current data gaps, as well as identify targeted research needs for the future. Phase 2 of the project built on collaboration with data custodians to develop data sharing agreements for use of these datasets to construct spatial models to refine and update species distributions. See 'online resources' section of this record for downloadable outputs.
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Water samples collected on the RV Investigator Transit voyage IN2018_T01 were analysed for concentration of chlorophyll a.
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Phytoplankton was counted and identified from five sites over the 5-year period. Annual cycles in abundance are available (as cells mL-1), along with detailed species identification. Cell measurements and approximate geometric shape were also recorded for the calculation of biovolume (μL cell-1). Diatoms and dinoflagellates dominated the samples in terms of biomass, however, small cells were also very abundant throughout each year. The data are restricted to an integrated sample from the top 12 m of the water column. Fluorescence profiles elsewhere in this dataset can provide an indication of phytoplankton presence lower in the water column.
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The Tasman Fracture Commonwealth Reserve complements the Port Davey Marine Reserve (encompassing Port Davey, Bathurst Channel and Bathurst Harbour), which was proclaimed by the Tasmanian Government in 2005. It spans the continental shelf, continental slope and deeper water ecosystems south of Tasmania, and is scored by steep canyons. It also encloses other geological features, including steep escarpments and troughs, saddles, basins, and part of a plateau that is over 400 km long and rises up to 3 km above the sea floor. The reserve includes a number of undersea peaks rising to less than 1500 m below the sea surface that provide habitat to deepwater hard corals. These corals provide a structure and habitat for a rich diversity of marine invertebrate animals that live attached corals. This record describes a geomorphology map for the Tasman Fracture CMR that was prepared using bathymetry and backscatter data sourced from CSIRO and Geoscience Australia.
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Seven case study locations (Keep, Daly, Roper, McArthur, Flinders, and Gilbert River estuaries, and Darwin Harbour) were used to test the utility of the Australian Landsat data archive in the Digital Earth Australia analysis platform for characterising and monitoring the condition and change in coastal habitats. A suite of analyses was undertaken including: assessing the extent of different coastal habitats, detecting coastal change including change in mangrove communities, and the distribution of intertidal areas. The work was successful in: (a) generating baseline information for the case study areas; and, (b) developing valuable monitoring tools for future use.
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This data describes the characterisation and estimated concentration of marine plastics in waters around Australia from surface net tows. The marine plastics recorded were predominantly small fragments (‘‘microplastics’’) resulting from the breakdown of larger objects made of polyethylene and polypropylene (e.g. packaging and fishing items). This data accompanies the following publication: Reisser J, Shaw J, Wilcox C, Hardesty BD, Proietti M, et al. (2013) Marine Plastic Pollution in Waters around Australia: Characteristics, Concentrations, and Pathways. PLoS ONE 8(11): e80466. doi:10.1371/journal.pone.0080466
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This dataset comes from the Floating Forests project (https://floatingforests.org). Floating Forests is an online citizen science project attempting to map the cover of surface-canopy forming kelps, primarily the giant kelp Macrocystis pyrifera, using Landsat data. To acquire the data, citizen scientists were given tiles of images taken from the Landsat series of satellites (https://landsat.usgs.gov/) scenes that had been manipulated to make kelp more visible. Landsat has a roughly two week repeat time for the entire globe and a 30m resolution, although given variability in weather quarterly aggregation is recommended. Each image was scene at minimum four times. If no kelp was noted, then it was retired and scored as a zero. If kelp was noted in the first four classifications, then an individual image was shown to fifteen people total. The polygons of kelp beds presented here represent consensus classifications from the platform and are tagged with minimum number of users who classified pixels in the polygons as kelp. For example, at the five user threshold, each area represents pixels where at least five users - not necessarily the same five users - said there was kelp present. This consensus classification has been shown to match very closely to expert classifications. For more information and links to outputs, see https://blog.floatingforests.org in addition to the main project site. Or go to the main project site, and start a conversation in the "talk" section of the site.
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Water samples for the analysis of pigments using High Performance Liquid Chromatography (HPLC) were collected only in the first 12 months of the sampling program. Pigment analysis is used to estimate algal community composition and concentration. Pigments which relate specifically to an algal class are termed marker or diagnostic pigments. Some of these diagnostic pigments are found exclusively in one algal class (e.g. prasinoxanthin in prasinophytes), while others are the principal pigments of one class, but are also found in other classes (e.g. fucoxanthin in diatoms and some haptophytes; 19′-butanoyloxyfucoxanthin in chrysophytes and some haptophytes). The presence or absence of these diagnostic pigments can provide a simple guide to the composition of a phytoplankton community, including identifying classes of small flagellates that cannot be determined by light microscopy techniques. There was general similarity in pigment composition between all sites, with a presence of diatoms (as indicated by fucoxanthin), haptophytes (hex-fucoxanthin), prasinophytes (prasinoxanthan), cryptophytes (alloxanthan), cyanophytes (zeaxanthan) and green algae (chl-b) in nearly all monthly samples at all sites. The green algae could be in the form of euglenophytes or prasinophytes; the absence of the pigment lutein in all samples indicates that chlorophytes are not present in Storm Bay, at least at the sites sampled.
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Understanding the patterns and characteristics of sedimentary deposits on the conjugate Australian-Antarctic margins is critical to reveal the Cretaceous-Cenozoic tectonic, oceanographic and climatic conditions in the basin. However, unravelling its evolution has remained difficult due to the different seismic stratigraphic interpretations on each margin and sparse drill sites. Here, for the first time, we collate all available seismic reflection profiles on both margins and use newly available offshore drilling data, to develop a consistent seismic stratigraphic framework across the Australian-Antarctic basins. We find sedimentation patterns similar in structure and thickness, prior to the onset of Antarctic glaciation, enabling the basin-wide correlation of four major sedimentary units and their depositional history. We interpret that during the warm and humid Late Cretaceous (~83-65 Ma), large onshore river systems on both Australia and Antarctica resulted in deltaic sediment deposition offshore. We interpret that the onset of clockwise bottom currents during the Early Paleogene (~58-48 Ma) formed prominent sediment drift deposits along both continental rises. We suggest that these currents strengthened and progressed farther east through the Eocene. Coevally, global cooling (<48 Ma) and progressive aridification led to a large-scale decrease in sediment input from both continents. Two major Eocene hiatuses recovered by the IODP site U1356A at the Antarctic continental slope likely formed during this pre-glacial phase of low sedimentation and strong bottom currents. Our results can be used to constrain future paleo-oceanographic modelling of this region and aid understanding of the oceanographic changes accompanying the transition from a greenhouse to icehouse world.
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