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We assessed the impact of the Zonal Wave-3 atmospheric mode on the Antarctic Margins. The Zonal Wave-3 mode is the first mode of meridional winds over the Southern Ocean and has been linked to important sea ice and heat flux anomalies. It is expected to become stronger in the future, but there is only very limited knowledge on its impact on the Southern Ocean beneath sea ice. We set up a range of atmospheric perturbation on the ACCESS-OM2 ocean–sea ice model to assess the regional impact of the ZW3 mode and its different phases on the subpolar Southern Ocean.
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This dataset contains the supplementary data and code accompanying the publication: Ward, D., Hill, N., Melbourne-Thomas, J., Welsford, D., Arangio, R., McNeill, M., Wotherspoon, S., Ziegler, P., Corney, S. (2025) Exploring mechanisms of change in a Southern Ocean fishery with a co-produced network model, ICES Journal of Marine Science. The study aimed to elucidate likely responses of the system to change, and mechanisms by which environmental, ecological or fishery behavioural changes could affect catch rates and toothfish stocks in the Heard and McDonald Islands (HIMI) fishing area. In the study, we co-developed a set of 128 qualitative network models of the Heard and McDonald Islands (HIMI) Patagonian toothfish fishery–stock–ecosystem interactions system with knowledge holders from industry and science. These different model versions capture different possible configurations of interactions for which the sign of the effects (positive or negative) are unknown. For each model versions, we simulated 10,000 quantitative instances of the qualitative model. We analysed these model outputs to understand 1) mean qualitative responses of system components (nodes) in 8 test scenarios (press increases in environmental, fishery, or ecosystem nodes); 2) how ‘unknown’ effect signs affected qualitative responses of key nodes to change; and 3) relationships between responses and the strength of effects originating from nodes being perturbed. Please refer to Ward et al. (2025) for more detailed description of the methodology and findings, and the README file for description of data and code contained in this repository.
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This dataset contains raw RNA sequencing reads from juvenile Ecklonia radiata (Laminariales) collected from Coal Point, Tasmania, and used in a controlled laboratory experiment examining the effects of temperature and elevated CO₂ on gene expression. Individuals were exposed to three temperatures (6, 16, and 26 °C) under two CO₂ levels: current (~420 µatm) and future (~1000 µatm), representing RCP 8.5 projections. Total RNA was extracted from blade tissue and sequenced on an Illumina NovaSeq 6000 platform to produce 150 bp paired-end reads. The dataset includes raw FASTQ files from 30 biological samples (n = 5 per treatment combination) used for transcriptomic analyses investigating the molecular responses of E. radiata to ocean warming and acidification.
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These files contain the data recorded from a mesocosm experiment conducted in Bergen, Norway 2022 which assessed the effect of simualted mineral-based (silicate or calcium) ocean alkalinity enhancement (OAE) on diatom silicification. Ten mesocosms were used in total, divided into two groups either the silicate- or calcium based group and alkalinity was increased by either 0, 150, 300, 450 or 600 µmol L-1 above natrually occuring levels. The PDMPO-fluorescence (an appropriate proxy for silicification) of diatoms was recorded on eight seperate days during the experiment. Accompanying data includes measured; macronutrients (nitrate, nitrite, phophate, silicate), total alkalinity, biogenic silica in the water column and sediment trap.
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Physical and chemical parameters at five Pacific oyster (Crassostrea gigas) growing areas in Tasmania - Pittwater, Pipeclay Lagoon, Little Swanport, Georges Bay and Simpsons Bay - were measured as part of a study to determine the carrying capacity of the areas for oyster farming. The data represented by this record, was collected in Little Swanport. This has provided valuable environmental data for these areas. The hydrodynamic regimes at each area except Simpsons Bay were studied, including high and low water volumes, flushing rates, flow rates and depth contours. Temperature, salinity and concentrations of nitrates, phosphates, silicates and chlorophyll a were measured monthly at several sites in each area. The change in these parameters over different time scales also was examined at two sites in Pittwater and indicated temporal and spatial variability in the environmental parameters measured.
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The Flinders CMR AUV survey was a pilot study undertaken in June 2013 as part of the National Marine Biodiversity Hub's National monitoring, evaluation and reporting theme. The aim of this theme is to develop a blueprint for the sustained monitoring of the South-east Commonwealth Marine Reserve Network. The particular aim of the survey was to contribute to an inventory of the distribution and cover of epibenthic biota in the reserve using IMOS AUV 'Sirius'. Data contained here represents a scored subset of the ~ 36,700 images collected at the Flinders CMR. Images were scored for proportion cover of visible macrobiota using 25 random points superimposed on each image. Taxon were biologically classified using CATAMI (http://catami.org/).
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We compare the formulation and emergent dynamics of 11 CMIP6 IPCC marine biogeochemical models. We find that the largest source of uncertainty across model simulations of marine carbon cycling is grazing pressure (i.e. the phytoplankton specific loss rate to grazing). Variability in grazing pressure is driven by large differences in zooplankton specific grazing rates, which are not sufficiently compensated for by offsetting differences in zooplankton specific mortality rates. Models instead must tune the turnover rate of the phytoplankton population to balance large differences in top-down grazing pressure and constrain net primary production. We then run a controlled sensitivity experiment in a global, coupled ocean-biogeochemistry model to test the sensitivity of marine carbon cycling to this uncertainty and find that even when tuned to identical net primary production, export and secondary production remain extremely sensitive to grazing, likely biasing predictions of future climate states and food security.
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The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Geographe Bay in the southwest Capes region. The marine environment at this location varies from extensive seagrass meadows in protected waters, to kelp-dominated granite and limestone reefs in areas of high wave energy. A small number of corals are also found throughout the region, reflecting the influence of the southward flow of the Leeuwin Current. The fish fauna is also diverse, with a high proportion of endemic species.
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This study considered a range of water-column and sediment (benthos) based variables commonly used to monitor estuaries,utilising estuaries on the North-West Coast of Tasmania (Duck, Montagu, Detention, and Black River). These included: salinity, dissolved oxygen, turbidity, nutrient and chlorophyll a levels for the water-column; and sediment redox, organic carbon content, chlorophyll a and macroinvertebrate community structure amongst the benthos. In addition to comparing reference with impacted estuaries, comparisons were also made across seasons, commensurate with seasonal changes in freshwater river input, and between regions within estuaries (upper and lower reaches) - previously identified in Hirst et al. (2005). This design enabled us to examine whether the detection of impacts (i.e. differences between reference and impacted systems) was contingent on the time and location of sampling or independent of these factors. The data represented by this record was collected in the Detention River.
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This study considered a range of water-column and sediment (benthos) based variables commonly used to monitor estuaries,utilising estuaries on the North-West Coast of Tasmania (Duck, Montagu, Detention, and Black River). These included: salinity, dissolved oxygen, turbidity, nutrient and chlorophyll a levels for the water-column; and sediment redox, organic carbon content, chlorophyll a and macroinvertebrate community structure amongst the benthos. In addition to comparing reference with impacted estuaries, comparisons were also made across seasons, commensurate with seasonal changes in freshwater river input, and between regions within estuaries (upper and lower reaches) - previously identified in Hirst et al. (2005). This design enabled us to examine whether the detection of impacts (i.e. differences between reference and impacted systems) was contingent on the time and location of sampling or independent of these factors. The data represented by this record was collected in the Duck Bay.
IMAS Metadata Catalogue