Dive surveys were conducted in 2014 and the same sites resurveyed annually until 2022 (excluding 2021), to establish a baseline and monitor the status of the critically endangered spotted handfish (Brachionichthys hirsutus) population. This dataset is a summary of all surveys season 2014 to 2022 (excluding 2021) in which the 11 sites across the Derwent Estuary and D'Entrecasteaux Channel were assessed. The data describes the search effort (transect length, swathed area) and counts of handfish observed on each transect, including size measurements (total length) and depth records for each sighted fish.

At the inception of our project, no study had examined particle fluxes in the Subantarctic Zone (SAZ) of the Southern Ocean, despite the fact that the SAZ represents a large portion of the total area of the Southern Ocean, serve as a strong sink for atmospheric (~1G t C yr-1 [Metzl et al., 1999]), and is central to hypotheses linking particle fluxes and climate change [Francois et al., 1997; Kumar et al., 1995; Sigman et al., 1999]. The SAZ serves as an interface between the cold nutrient-rich waters to its south and the nutrient-depleted subtropical gyres to its north. SAZ upper layers are marked by a thick layer of relatively homogenous Subantarctic Mode Water (SAMW), which overlies Antarctic Intermediate Water (AAIW). Both water masses are subducted northward beneath the subtropical gyres. Thus particles leaving the surface in these regions contribute to carbon redistribution via both the fraction that reaches the deep sea by settling and the fraction that is remineralized within SAMW or AAIW and subsequently subducted. The SAZ exhibits surface water carbon dioxide partial pressures well below atmospheric equilibrium, but PFZ waters are closer to atmospheric equilibrium in this sector [Metal et al., 1999; Poppet al., 1999]. The relative physical and biological contributions to these carbon dioxide partial pressure variations are unclear, but it is important to determine them because physical and biological carbon dioxide transfers are expected to show different responses to climate change [ Matear et al., 1999; Sarmiento and LeQuere, 1996]. For these reasons we focused on the SAZ and, for comparative purposes, on the PFZ to its south. We measured particle fluxes using moored sinking particle traps at three sites in the SAZ, in the PFZ, and beneath the Subantarctic Front (SAF), which separates them. This record describes particle flux data collected between 2000 and 2001. The NetCDF data contains the following variables. Please note not all variables are supplied in all files, specifically there are not uncertainty estimates and no quality control flags for this data. -----DATA DICTIONARY----- Name, description, units, standard name TIME, time, YYYY-MM-DD, time of sample midpoint TIME_START, time sample open, YYYY-MM-DD, time sample open NOMINAL_DEPTH, depth, m, nominal depth LATITUDE, latitude, degrees_north, latitude of anchor LONGITUDE, longitude, degrees_east, longitude of anchor pressure_actual, actual, dbar, actual pressure sample, sample number, 1, sample number sample_quality_control, quality flag for sample number, unitless, quality flag for sample number mass_flux, <1mm, mg m-2 d-1, particulate total mass flux mass_flux_uncertainty, uncertainty for particulate total mass flux, mg m-2 d-1,), uncertainty for particulate total mass flux mass_flux_quality_control, quality flag for particulate total mass flux, unitless, quality flag for particulate total mass flux SAL_BRINE, supernatant, 1, sample supernatant practical salinity SAL_BRINE_uncertainty, uncertainty for sample supernatant practical salinity, 1, uncertainty for sample supernatant practical salinity SAL_BRINE_quality_control, quality flag for sample supernatant practical salinity, unitless, quality flag for sample supernatant practical salinity pH_BRINE, supernatant, 1, sample supernatant pH NBS scale pH_BRINE_uncertainty, uncertainty for sample supernatant pH NBS scale, 1, uncertainty for sample supernatant pH NBS scale pH_BRINE_quality_control, quality flag for sample supernatant pH NBS scale, unitless, quality flag for sample supernatant pH NBS scale PC_mass_flux, <1mm, mg m-2 d-1, particulate total carbon mass flux PC_mass_flux_uncertainty, uncertainty for particulate total carbon mass flux, mg m-2 d-1, uncertainty for particulate total carbon mass flux PC_mass_flux_quality_control, quality flag for particulate total carbon mass flux, unitless, quality flag for particulate total carbon mass flux PN_mass_flux, <1mm, mg m-2 d-1, particulate total nitrogen mass flux PN_mass_flux_uncertainty, uncertainty for particulate total nitrogen mass flux, mg m-2 d-1, uncertainty for particulate total nitrogen mass flux PN_mass_flux_quality_control, quality flag for particulate total nitrogen mass flux, unitless, quality flag for particulate total nitrogen mass flux POC_mass_flux, <1mm, mg m-2 d-1, particulate organic carbon mass flux POC_mass_flux_uncertainty, uncertainty for particulate organic carbon mass flux, mg m-2 d-1, uncertainty for particulate organic carbon mass flux POC_mass_flux_quality_control, quality flag for particulate organic carbon mass flux, unitless, quality flag for particulate organic carbon mass flux PIC_mass_flux, <1mm, mg m-2 d-1, particulate inorganic carbon mass flux PIC_mass_flux_uncertainty, uncertainty for particulate inorganic carbon mass flux, mg m-2 d-1, uncertainty for particulate inorganic carbon mass flux PIC_mass_flux_quality_control, quality flag for particulate inorganic carbon mass flux, unitless, quality flag for particulate inorganic carbon mass flux BSi_mass_flux, <1mm, mg m-2 d-1, particulate biogenic silicon mass flux BSi_mass_flux_uncertainty, uncertainty for particulate biogenic silicon mass flux, mg m-2 d-1, uncertainty for particulate biogenic silicon mass flux BSi_mass_flux_quality_control, quality flag for particulate biogenic silicon mass flux, unitless, quality flag for particulate biogenic silicon mass flux TIME_END, time sample closed, YYYY-MM-DD, time sample closed Reference, citable reference DOI, DOI

The MOU74 Box, off the northwest Australian coastline, is an area of approximately 50,000 sq. km within the Australian Fishing Zone. It contains five large, shallow reef systems (less than 15 m deep) ranging in size from 227 sq. km (Ashmore Reef) to 4.5 sq. km (Browse Island). They total approximately 560 sq. km in area. Immediately north of the MOU74 Box within the Australian Fishing Zone (Little Area A) is another shallow reef, Hibernia Reef. In addition to the shallow reefs, there is approximately 925 sq. km of shoal areas (15 to 50 m deep) within the MOU74 Box and 301 sq. km of shoal areas in Little Area A. The reefs and shoals support populations of sedentary reef resources including several species of holothurians (beche-de-mer, sea cucumbers) and trochus, as well as reef-associated fin-fish and sharks. These resources have been fished for many years by Indonesian fishers. Ashmore Reef was declared a Marine Nature Reserve in 1983, banning the removal of fauna and flora to a depth of 50 m. The remaining reefs in the area are under continued, and probably increasing, fishing pressure. The marine resources of the MOU74 Box are managed by the Australian Government. Under the terms of a memorandum of understanding (MOU) between the Australian and Indonesian governments, continued traditional fishing by Indonesian fishing vessels is allowed, principally for sedentary resources such as beche-de-mer (trepang) and trochus, but also fin-fish and reef shark. Apart from limited catch data collected by surveillance and regulatory authorities, little is known about the catch of the Indonesian fishers and the effects of fishing on the target species. There are concerns that the current level of fishing may be unsustainable. In September and October 1998, CSIRO Division of Marine Resources surveyed the shallow reefs (0-15 m deep) and shoal areas (15-50 m deep) of the MOU74 Box area and Little Area A to the north. Its purpose was to assess the status of the reef resources in the area, and the environment that supports them. Fieldwork for the survey was completed on 10 October 1998. Overall, the sedentary marine living resources on the shallow reefs were heavily depleted with the high-value species over-exploited and the lower value species probably either fully or over-exploited. Despite the low density, there appears to be a sustained fishing effort by Indonesian fishers in the area. A drastic reduction in effort would be required to allow for a recovery of the higher value species, and to protect other species from severe depletion. The exception is Ashmore Reef, where there were significant populations of most target species. However, there is most likely some illegal fishing occurring on Ashmore Reef and there is clear evidence of exploitation of at least the high-value resources. The nature of these fisheries and the depleted state of the other reefs in the MOU74 Box suggests that the remaining resources on Ashmore Reef could be quickly depleted if the protection currently given to the reef is not maintained and possibly enhanced. For many reasons, including the potential for recruitment of larvae to depleted reefs, it is important that these populations are protected. Year round protection of the resources on Ashmore Reef should be considered. This record describes the following survey data for the Timor MOU74 Box: • Classified satellite habitat map for Scott and Seringapatam Reefs. • Classified satellite habitat map for Ashmore, Hibernia and Cartier Reefs.

At the inception of our project, no study had examined particle fluxes in the Subantarctic Zone (SAZ) of the Southern Ocean, despite the fact that the SAZ represents a large portion of the total area of the Southern Ocean, serve as a strong sink for atmospheric (~1G t C yr-1 [Metzl et al., 1999]), and is central to hypotheses linking particle fluxes and climate change [Francois et al., 1997; Kumar et al., 1995; Sigman et al., 1999]. The SAZ serves as an interface between the cold nutrient-rich waters to its south and the nutrient-depleted subtropical gyres to its north. SAZ upper layers are marked by a thick layer of relatively homogenous Subantarctic Mode Water (SAMW), which overlies Antarctic Intermediate Water (AAIW). Both water masses are subducted northward beneath the subtropical gyres. Thus particles leaving the surface in these regions contribute to carbon redistribution via both the fraction that reaches the deep sea by settling and the fraction that is remineralized within SAMW or AAIW and subsequently subducted. The SAZ exhibits surface water carbon dioxide partial pressures well below atmospheric equilibrium, but PFZ waters are closer to atmospheric equilibrium in this sector [Metal et al., 1999; Poppet al., 1999]. The relative physical and biological contributions to these carbon dioxide partial pressure variations are unclear, but it is important to determine them because physical and biological carbon dioxide transfers are expected to show different responses to climate change [ Matear et al., 1999; Sarmiento and LeQuere, 1996]. For these reasons we focused on the SAZ and, for comparative purposes, on the PFZ to its south. We measured particle fluxes using moored sinking particle traps at three sites in the SAZ, in the PFZ, and beneath the Subantarctic Front (SAF), which separates them. This record describes particle flux data collected between 2004 and 2005. The NetCDF data contains the following variables. Please note not all variables are supplied in all files, specifically there are not uncertainty estimates and no quality control flags for this data. -----DATA DICTIONARY----- Name, description, units, standard name TIME, time, YYYY-MM-DD, time of sample midpoint TIME_START, time sample open, YYYY-MM-DD, time sample open NOMINAL_DEPTH, depth, m, nominal depth LATITUDE, latitude, degrees_north, latitude of anchor LONGITUDE, longitude, degrees_east, longitude of anchor pressure_actual, actual, dbar, actual pressure sample, sample number, 1, sample number sample_quality_control, quality flag for sample number, unitless, quality flag for sample number mass_flux, <1mm, mg m-2 d-1, particulate total mass flux mass_flux_uncertainty, uncertainty for particulate total mass flux, mg m-2 d-1,), uncertainty for particulate total mass flux mass_flux_quality_control, quality flag for particulate total mass flux, unitless, quality flag for particulate total mass flux SAL_BRINE, supernatant, 1, sample supernatant practical salinity SAL_BRINE_uncertainty, uncertainty for sample supernatant practical salinity, 1, uncertainty for sample supernatant practical salinity SAL_BRINE_quality_control, quality flag for sample supernatant practical salinity, unitless, quality flag for sample supernatant practical salinity pH_BRINE, supernatant, 1, sample supernatant pH NBS scale pH_BRINE_uncertainty, uncertainty for sample supernatant pH NBS scale, 1, uncertainty for sample supernatant pH NBS scale pH_BRINE_quality_control, quality flag for sample supernatant pH NBS scale, unitless, quality flag for sample supernatant pH NBS scale PC_mass_flux, <1mm, mg m-2 d-1, particulate total carbon mass flux PC_mass_flux_uncertainty, uncertainty for particulate total carbon mass flux, mg m-2 d-1, uncertainty for particulate total carbon mass flux PC_mass_flux_quality_control, quality flag for particulate total carbon mass flux, unitless, quality flag for particulate total carbon mass flux PN_mass_flux, <1mm, mg m-2 d-1, particulate total nitrogen mass flux PN_mass_flux_uncertainty, uncertainty for particulate total nitrogen mass flux, mg m-2 d-1, uncertainty for particulate total nitrogen mass flux PN_mass_flux_quality_control, quality flag for particulate total nitrogen mass flux, unitless, quality flag for particulate total nitrogen mass flux POC_mass_flux, <1mm, mg m-2 d-1, particulate organic carbon mass flux POC_mass_flux_uncertainty, uncertainty for particulate organic carbon mass flux, mg m-2 d-1, uncertainty for particulate organic carbon mass flux POC_mass_flux_quality_control, quality flag for particulate organic carbon mass flux, unitless, quality flag for particulate organic carbon mass flux PIC_mass_flux, <1mm, mg m-2 d-1, particulate inorganic carbon mass flux PIC_mass_flux_uncertainty, uncertainty for particulate inorganic carbon mass flux, mg m-2 d-1, uncertainty for particulate inorganic carbon mass flux PIC_mass_flux_quality_control, quality flag for particulate inorganic carbon mass flux, unitless, quality flag for particulate inorganic carbon mass flux BSi_mass_flux, <1mm, mg m-2 d-1, particulate biogenic silicon mass flux BSi_mass_flux_uncertainty, uncertainty for particulate biogenic silicon mass flux, mg m-2 d-1, uncertainty for particulate biogenic silicon mass flux BSi_mass_flux_quality_control, quality flag for particulate biogenic silicon mass flux, unitless, quality flag for particulate biogenic silicon mass flux TIME_END, time sample closed, YYYY-MM-DD, time sample closed Reference, citable reference DOI, DOI