The Black Rockcod (Epinephelus daemelii) is a large, slow-growing, long-lived reef fish that occurs in Australia along the coast of New South Wales, including at Lord Howe Island. Populations of black rockcod have been significantly reduced here due to overfishing, accidental hooking, and loss or degradation of estuarine and intertidal nursery habitats. As a result, the species is listed as ‘Vulnerable’ under both the Commonwealth Environmental Protection and Biodiversity Conservation Act 1999 and the NSW Fisheries Management Act 1994. Despite having been protected from fishing in NSW since 1983, black rockcod are still taken illegally, or caught incidentally and released, which can lead to mortality post-release from embolism. Its protection status results from concerns of population declines across its range. The NSW Government has identified long-term population monitoring as a a high priority for the species’ recovery plan. Broadscale surveys of black rockcod were first conducted using the diver Underwater Visual Census (UVC) technique in 2009-11 when 83 sites were sampled from Port Stephens to Cook Island in far northern NSW, including the waters of Lord Howe Island. This NESP Marine and Coastal Hub project 3.14 funded the repeat of these broadscale surveys in 2023, with 8 additional sites (91 total) sampled using the same technique. For each black rockcod sighting, the length of the fish was visually estimated by divers, and also filmed using a diver stereo camera system where possible to obtain an exact length measurement. Other attributes recorded included the habitat the fish was found in, if the sighting was cryptic (i.e. hidden or camouflaged), and the depth of the sighting. Based on the broadscale survey sites in 2009-11, a subset of 19 key Black rockcod survey sites along mainland NSW were established These comprised of two sites in the Cape Byron Marine Park (CBMP), five sites in the Solitary Islands Marine Park (SIMP) two sites at SW Rocks (Fish Rock), and ten sites within the Port Stephens-Great Lakes Marine Park (PSGLMP). An additional 18 key sites were established at Lord Howe Island (LHIMP) and surveyed in 2011, 2019, 2023 & 2024. These surveys involved an identical methodology to the broadscale surveys, but without the use of stereo cameras as diver estimates of fish size were shown to be reasonably similar. This NESP MaC Hub project 3.14 provided funding for the resurveying of the 37 total key sites (where weather permitted) in both 2023 and 2024. The data provided by this record includes: (1) all black rockcod sightings and measurements for broadscale sites (2023) and key sites (2023 & 2024); (2) a comparison of the counts of black rockcod recorded at broadscale sites in 2009-11 (n=83) and again in 2023 (n=91); and (3) a comparison of the count of black rockcod recorded at key monitoring sites in northern NSW (n=19) and Lord Howe Island (n=18) across monitoring years 2009-2024.

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Assessing changes in black rockcod abundance and size". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The Black Rockcod (Epinephelus daemelii) is a large, reef-dwelling species that can live for more than 60 years. In Australia it occurs along the coast of New South Wales, including at Lord Howe Island. Black Rockcod populations have been significantly reduced here due to overfishing, accidental hooking, and loss or degradation of estuarine and intertidal nursery habitats. As a result, the species is listed as Vulnerable under Commonwealth and NSW legislation. Despite having been protected from fishing in NSW since 1983, Black Rockcod are still taken illegally, or caught incidentally and released, which can lead to mortality post-release from embolism. Long-term population monitoring is a high priority identified by the species’ recovery plan and the NSW Fisheries Scientific Committee. In 2010, a broadscale baseline survey (81 sites) was undertaken in northern NSW and Lord Howe Island, followed by smaller surveys every four to five years. This project repeated the initial 81 baseline site surveys to assess if protection measures, such as marine protected area sanctuary zones, are assisting in recovery of black rockcod. This contributed to a 13-year time series (2010 – 2023) that was used to examine distribution and population structure of rockcod to assess if recovery actions being implemented are effective. Outputs • underwater visual census (UVC) data for black rock cod [dataset] • Final project report [written]

This record provides an overview of the NESP Marine and Coastal Hub small-scale study - "A photo-identification study of southern right whales to update aggregation area classification in the southwest of Australia". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The population of Southern Right Whales (SRW) in the Southern Hemisphere has been recovering slowly from near extinction due to its decimation from whaling before its ban in the mid-1970’s. The population that visits the Australian coast each year to breed is estimated to have increased by about 4–5% per year in the past two decades, bringing the total population to approximately 3,500 whales. As the population increases, the whales extend their breeding areas into previously occupied suitable habitat. As the species recovers, there is increasing evidence of expansion of aggregation areas. Consequently, there is a need to update known established aggregation areas and Biologically Important Areas (BIAs) and update relevant Marine Parks management plans based on new evidence. Flinders Bay and Geographe Bay off south-western Western Australia were likely to have been important calving areas before commercial whaling began. Much of this habitat is popular for recreational boating and other marine activities. This project collated and completed photo-ID matching of southern right whale images collected between 2010 to 2020 in the southwest of Australia, and uploaded these to the Australasian Right Whale Photo-Identification Catalogue (ARWPIC). The photo-ID matching outcomes provide evidence that Flinders Bay and Geographe Bay now fit the criteria to be recognised nationally as Biologically Important Areas (BIAs) for Southern Right Whales. Outputs • Photo-identifications of individual whales in southwestern Australia for 1991-2021 (photo-matches contributed to ARWPIC) • Final Project Report, including evidence and recommendations for updating aggregation area classification in the southwest of Australia according to the Commonwealth criteria [written]

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Delineation and estimation of the Maugean skate population in Macquarie Harbour, Tasmania". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The endangered Maugean skate is now only found in Macquarie Harbour, which has a long history of environmental degradation, and recent research suggests that the population may be declining. However, our current abundance estimation tools are inadequate to determine population status and a new method is needed. This project will use next generation genetic sequencing and novel imaging survey tools to delineate and estimate the size of the Macquarie Harbour Maugean skate population to inform conservation strategies. There is also a need to investigate the evolutionary potential of the Maugean skate to adapt to the changing environmental conditions. This research will address these needs by examining the skate's genetic diversity and fine-scale population structure using whole genome typing, and developing a high-resolution dataset of genome-wide single nucleotide polymorphisms. This genetic approach will help inform adaptive management strategies, such as captive breeding, and enhance our ability to detect differentiated lineages with adaptive potential. Outputs • Tissue sampling results and genome-wide population genetic structure [dataset] • Adaptive resolution imaging sonar (ARIS) and lidar water column scanning [dataset] • Final project report [written]

This record provides an overview of the NESP Marine and Coastal Hub bridging study - "Aerial survey of the Southern Right Whale ‘western’ sub-population off southern Australia". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Aerial surveys of Southern Right Whales have been conducted across the southern Australian coast from Perth, WA to Ceduna, SA since 1993, as part of a long-term program to monitor their recovery. The surveys data provide a long-term population trend for this ‘western’ population, and provide an understanding of connectivity with the ‘eastern’ population as part of a national population assessment. The NESP Marine Biodiversity Hub funded the aerial surveys in 2015–2020 and the Marine and Coastal Hub funded the survey in 2021. (See Project 1.26: https://catalogue.aodn.org.au/geonetwork/srv/eng/catalog.search#/metadata/b85b2c7d-4631-477a-9217-2cae65f9cf0a) The 2022 survey ensures an uninterrupted time series in the long-term population trend data for this Endangered species. This is particularly important given the non-annual breeding cycle (typically every three years), such that annual surveys are essential to maintain an acceptable level of precision in estimating population trends and key life history parameters (calving intervals) to track the recovery of the species. Continued monitoring of the population is needed to evaluate whether there is a longer term and continuous change (in population size and calving intervals) in the population as indicated by recent sightings and population trend data. Outputs • Estimate of relative abundance and population trend compared to long-term aerial survey sightings [dataset] • Individual whale photo-identification data - 2021-22 season [imagery - published to ARWPIC] • Final technical report detailing overall numbers of southern right whales observed within the survey region, their gender (and life stage where possible) and spatial distribution of individuals [written]

This record provides an overview of the NESP Marine and Coastal Hub bridging study - "A photo-identification study of southern right whales to update aggregation area classification in the southwest of Australia". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The southern right whale (Eubalaena australis) is listed as Endangered under the Environmental Protection and Biodiversity Conservation Act 1999 (EPBC Act) and is subject to conservation listings in five Australian states due to severe population declines caused by historical whaling. The Southern Right Whale Conservation Management Plan 2011–2021 outlines the current status of, and threats to, the southern right whale in Australian waters and prioritises recovery actions during this period. The long-term vision for the recovery of this species in Australian waters is to increase the population size to a level that the conservation status improves, and the species no longer qualifies for listing as threatened under any of the EPBC Act listing criteria. The plan must be periodically updated to reflect new knowledge and prioritise the research needed to monitor population recovery and predict the impacts of threats such as climate change. Aerial surveys of southern right whales have been conducted across the southern Australian coast from Perth (W.A.) to Ceduna (S.A.) since 1993, as part of a long-term program to monitor the recovery, and inform the Conservation Management Plan (2011-2021), for this Endangered species. In Australia’s south-east, there has been little sign of recovery in southern right whale numbers following intense commercial whaling. A working hypothesis assumes separation between the ‘western’ and ‘eastern’ populations, largely due to loss of ‘cultural memory’ of whales migrating to the eastern range breeding areas. Given the relative paucity of animals that visit the southern Australian coast in areas other than south-west Australia, the western population is considered to represent the majority of the ‘Australian’ southern right whale population. The count data from these aerial surveys provide data on population trend and estimates of population size for the ‘western’ population, and hence the majority of the Australian southern right whales. Associated photo-identification data provide life history information (such as calving intervals) and connectivity between the ‘western’ and ‘eastern’ populations and contribute to the national southern right whale photo-id database: the Australasian Right Whale Photo-Identification Catalogue (ARWPIC). The 2020 aerial survey program recorded substantially lower numbers of whales than in the previous 13 years, and the lowest number of non-calving whales since the program started. This project conducted new aerial surveying in August 2021 to provide a relative estimate of annual population size for determining longer term population trends and contribute to determining if 2020 was an anomalous year or an indicator of some longer-term change to recent recovery rates and the female breeding cycle. Outputs • Aerial whale survey data (counts by size class, number, and location) - 2021-22 season [dataset] • Individual whale photo-identification data - 2021-22 season [imagery - published to ARWPIC] • Final Project Report including a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Eastern Grey Nurse Shark population abundance and trend". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Australia’s eastern grey nurse shark population is listed as Critically Endangered under the Environment Protection and Biodiversity Conservation Act 1999. The Recovery Plan for the Grey Nurse Shark identifies research and actions needed to improve the shark’s population status and ensure its long-term conservation. This project refines the abundance and trend estimate for the eastern Australian population of grey nurse shark and examined the shark’s expansion range into Victorian waters (evidence suggests the shark may now range as far west as Wilsons Promontory). The project builds upon previous research which has estimated the eastern grey nurse shark adult population at ~2,000 individuals. Epigenetic techniques are used estimate age of juveniles (based on patterns of DNA methylation), and stereo video analysis is used to obtain precise length measurements for use against growth curves. Understanding the species' population structure is important to inform the assessment of current conservation arrangements such as spatial closures. Findings will provide a more precise estimate of the abundance of Australia’s eastern grey nurse shark population, and reduce uncertainty surrounding trends in abundance by building a stronger evidence base for decision-making around the species’ recovery and conservation. Outputs • Tissue samples and extracted products from juvenile grey nurse sharks [dataset] • Final project report [written]

This record provides an overview of the NESP Marine and Coastal Hub Research Plan 2023 project "Informing southern right whale management through continued monitoring, determination of aggregation areas and development of approaches to increase data flow efficiencies and utility". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project will deliver priority information on southern right whales to address key knowledge gaps through: (i) updating long-term population abundance trends via aerial surveys of the western population and testing of platforms for improving photo-identification data flow efficiencies; (ii) the collection and utilisation of photos of the western population to identify biologically important reproductive areas and inform the estimation of population parameters;(iii) development of integrative methods for combining opportunistic and more formally collected observations, to expand the utility of datasets and (iv) collection of movement and genetic data to assess the connectivity and population identity of whales at the boundary of the eastern and western subpopulations. It will also conduct a consultative process for prioritising future work for informing future NESP work. Outputs • Updated southern right whale population assessments [dataset] • Individual whale photo-identifications in aggregation areas [image catalogue] • Updated SPRAT and BIA distributions [dataset] • Whale movement tracking [dataset] • Genetic data (for estimates of population connectivity) [dataset] • Final project report [written]

This record provides an overview of the NESP Marine and Coastal Hub small-scale study - "Australia’s Coastal Shorebirds: Trends and Prospects". No data outputs were generated by this project. -------------------- Coastal Australia is home to 37 regularly occurring migratory shorebird species, with many protected areas including Ramsar sites designated on the basis of shorebird populations. Many migratory shorebirds are declining rapidly, and hence the focus of conservation efforts at multiple levels of government in Australia and overseas. However, trend data are now nearly 10 years old, meaning the information available to assess where conservation actions are needed most urgently and whether conservation efforts are helping species recover are outdated. To ensure populations have the best chance at recovery and that resources are allocated where they are most likely to have the greatest positive impacts, it is critical to maintain up-to-date information on species trends. This project analysed 30 years of shorebird monitoring data collected by citizen science groups across Australia and curated by BirdLife Australia’s National Shorebird Monitoring Program to update national trend estimates, while also assessing the relative effects of human pressure and conservation efforts on population trends. In particular, it focused on 15 migratory shorebird species whose conservation status was being reassessed by the Australian Department of Climate Change, Energy, the Environment and Water. This project sets the stage for building the next decade of coastal shorebird conservation activity in Australia, coordinated through the national mechanism of the End User: National Migratory Shorebird Conservation Action Plan Steering Committee, with representatives from national and state governments as well as leading shorebird experts. Outputs • Fact Sheet on Australia's coastal shorebird trends and prospects [written] • Final Project Report, including a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the NESP Marine and Coastal Hub small-scale study - "Conservation of spotted handfish". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Spotted Handfish (Brachionichthys hirsutus) were once common across the bays and estuaries of South-eastern Tasmania. By 1996, however, populations had declined and the species was listed as Critically Endangered under Australia’s Environment Protection and Biodiversity Conservation Act 1999. The species is relatively short-lived, (5–10 years) and matures at more than two years’ old. This leaves a short window for reproduction, which relies on egg masses laid on seafloor structures such as stalked ascidians. If spawning fails, population declines may occur rapidly. With no planktonic life stage to aid dispersal, and low adult dispersal, outside recruitment to re-establish collapsed populations is unlikely. Analysis of 23 years of Spotted Handfish survey data (1997–2019) supported by previous NESP Marine Biodiversity Hub work (project A10) helped develop a time-series of survey data, increasing biological understanding and contributing to effective management actions. This project recommenced surveys of multiple local populations, after a two-year gap, to ensure that the potential impacts of development of the Derwent estuary and surrounds handfish populations or their habitats can be detected. Included in the population surveying was identification of suitable locations to plant Artificial Spawning Habitats (ASH) where natural spawning structures have declined. This will continue to support the species' captive breeding program with industry and foster engagement with the indigenous and broader community through participation, talks, outreach, publications, and the National Handfish Recovery Team (NHRT). Outputs • A consolidated database of all available data on spotted handfish imagery, length frequency, and GPS regions to 2022 [time-series database] • Final Project Report, including a short summary of recommendations for policy makers of key findings [written]