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Coral community transect data collected concurrent with coral disease surveys in in the vicinity of Hoga Island in the Wakatobi Marine National Park, Sulawesi, Indonesia. Three replicate 20 m transects were collected by divers in each of reef flat, crest and slope habitats in 2005 (four sites, point intersect transect data), 2007, 2010 and 2011 (all six sites, line intersect transect data). For further detail see: Haapkylä, J., A. S. Seymour, J. Trebilco, and D. Smith. 2007. Coral disease prevalence and coral health in the Wakatobi Marine Park, south-east Sulawesi, Indonesia. Journal of the Marine Biological Association of the UK 87:403. Haapkylä, J., R. Unsworth, A. Seymour, J. Melbourne-Thomas, M. Flavell, B. Willis, and D. Smith. 2009. Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms 87:105–115. Haapkylä, J., J. Melbourne-Thomas, and M. Flavell. 2015. The association between coral communities and disease assemblages in the Wakatobi Marine National Park, south-eastern Sulawesi, Indonesia. Marine and Freshwater Research.