IMAS Metadata Catalogue
Genetic sequences of euryhaline Elasmobranchs (NESP MB A1)
This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).
Simple
Identification info
- Date (Creation)
- 2017-01-20
Identifier
- Title
- Information and documentation - Digital object identifier system
- Citation identifier
- ISO 26324:2012
- Code
- 10.25959/HVY5-F927
- Codespace
- doi.org
- Description
- Digital Object Identifier (DOI)
Principal investigator
- Credit
- The data collections described in this record are funded by the Australian Government Department of Agriculture, Water and the Environment (DAWE) through the NESP Marine Biodiversity Hub. In addition to NESP (DAWE) funding, this project is matched by an equivalent amount of in-kind support and co-investment from project partners and collaborators.
- Status
- Completed
Point of contact
- Topic category
-
- Biota
Extent
N
S
E
W
))
Temporal extent
- Time period
- 2010-10-01 2015-12-01
Vertical element
- Minimum value
- 0
- Maximum value
- 25
- Identifier
- EPSG::5715
- Name
- MSL depth
- Maintenance and update frequency
- Irregular
- Keywords (Theme)
-
- Close-kin mark-recapture
- Population genetics
- Euryhaline elasmobranchs
- Global Change Master Directory (GCMD) Earth Science Keywords Version 8.0
- Keywords (Taxon)
-
- Anoxypristis cuspidata
- Carcharhinus leucas
- Eusphyra blochii
- Glyphis garricki
- Glyphis glyphis
- Himantura uarnak
- Negaprion acutidens
- Pateobatis hortlei
- Pristis clavata
- Pristis pristis
- Rhizoprionodon taylori
- Urogymnus acanthobothrium
- Urogymnus dalyensis
- Glaucostegus typus
Resource constraints
- Classification
- Unclassified
Resource constraints
- Other constraints
- This dataset is hosted by the Institute for Marine and Antarctic Studies (IMAS), University of Tasmania, on behalf of CSIRO, Charles Darwin University, and Marine Biodiversity Hub Project A1.
Resource constraints
- Linkage
-
http://i.creativecommons.org/l/by/4.0/88x31.png
License Graphic
- Title
- Creative Commons Attribution 4.0 International License
- Website
-
http://creativecommons.org/licenses/by/4.0/
License Text
- Other constraints
- Cite data as: Feutry, P., & Kyne, P. (2017). Genetic sequences of euryhaline Elasmobranchs [Data set]. Institute for Marine and Antarctic Studies. https://doi.org/10.25959/HVY5-F927
Associated resource
- Title
- NESP MB Project A1 - Northern Australian hotspots for the recovery of threatened euryhaline species, 2015-2017 (CDU)
Identifier
- Association Type
- Dependency
- Initiative Type
- Project
- Language
- English
- Character encoding
- UTF8
- Supplemental Information
- Chen, X., Liu, M., Grewe, P. M., Kyne, P. M., & Feutry, P. (2014). Complete mitochondrial genome of the Critically Endangered speartooth shark Glyphis glyphis (Carcharhiniformes: Carcharhinidae). Chen, X., Wiley, T., Kyne, P. M., & Feutry, P. (2016). Complete mitochondrial genome of the Critically Endangered Smalltooth Sawfish Pristis pectinata (Rajiformes: Pristidae). Mitochondrial DNA Part A, 27(5), 3331-3332. Chen, X., Kyne, P. M., Pillans, R. D., & Feutry, P. (2016). Complete mitochondrial genome of the endangered narrow sawfish Anoxypristis cuspidata (Rajiformes: Pristidae). Mitochondrial DNA Part A, 27(6), 4172-4173. Feutry, P., Kyne, P. M., Grewe, P. M., Chen, X., & Liu, M. (2015). Whole mitogenome of the Endangered dwarf sawfish Pristis clavata (Rajiformes: Pristidae). Mitochondrial DNA, 26(2), 329-330. Feutry, P., Pillans, R. D., Kyne, P. M., & Chen, X. (2016). Complete mitogenome of the graceful shark Carcharhinus amblyrhynchoides (Carcharhiniformes: Carcharhinidae). Mitochondrial DNA Part A, 27(1), 314-315. Feutry, P., Grewe, P. M., Kyne, P. M., & Chen, X. (2015). Complete mitogenomic sequence of the Critically Endangered northern river shark Glyphis garricki (Carcharhiniformes: Carcharhinidae). Mitochondrial DNA, 26(6), 855-856. Feutry, P., Kyne, P. M., Peng, Z., Pan, L., & Chen, X. (2016). Complete mitochondrial genome of the Freshwater Whipray Himantura dalyensis. Mitochondrial DNA Part A, 27(3), 1589-1590. Feutry, P., Every, S. L., Kyne, P. M., Sun, R., & Chen, X. (2016). Complete mitochondrial genome of the Pigeye Shark Carcharhinus amboinensis (Carcharhiniformes: Carcharhinidae). Mitochondrial DNA Part A, 27(3), 2129-2130. Feutry, P., Kyne, P. M., & Chen, X. (2016). The phylogenomic position of the Winghead Shark Eusphyra blochii (Carcharhiniformes, Sphyrnidae) inferred from the mitochondrial genome. Mitochondrial DNA Part B, 1(1), 386-387. Feutry, P., Kyne, P. M., Pillans, R. D., Chen, X., Naylor, G. J., & Grewe, P. M. (2014). Mitogenomics of the Speartooth Shark challenges ten years of control region sequencing. BMC evolutionary biology, 14(1), 232. Feutry, P., Berry, O., Kyne, P. M., Pillans, R. D., Hillary, R. M., Grewe, P. M., ... & Bravington, M. (2016). Inferring contemporary and historical genetic connectivity from juveniles. Molecular Ecology. Feutry, P., Kyne, P. M., Pillans, R. D., Chen, X., Marthick, J., Morgan, D. L., & Grewe, P. M. (2015). Whole mitogenome sequencing refines population structure of the Critically Endangered sawfish Pristis pristis. Marine Ecology Progress Series, 533, 237-244.
Distribution Information
- Distribution format
-
- online sequence database
- OnLine resource
- DATA ACCESS - Euryhaline elasmobranch genetics sequence index accession/run numbers (for search in Genbank, Sequence Read Archive)
- OnLine resource
- Browse Associated Publications
- OnLine resource
- Sequence Access - KP233202 (Genbank)
- OnLine resource
- Sequence Access - KP400584 (Genbank)
- OnLine resource
- Sequence Access - KF006312 (Genbank)
- OnLine resource
- Sequence Access - KF381507 (Genbank)
- OnLine resource
- Sequence Access - KF956523 (Genbank)
- OnLine resource
- Sequence Access - KF646786 (Genbank)
- OnLine resource
- Sequence Access - KM244769 (Genbank)
- OnLine resource
- Sequence Access - KM921745 (Genbank)
- OnLine resource
- Sequence Access - KU892590 (Genbank)
- OnLine resource
- Sequence Access - KM100613 to KM100704 (Genbank)
- OnLine resource
- Sequence Access - KY039188 to KY039268 (Genbank)
Resource lineage
- Statement
- Genomic DNA was extracted from fin clips prior to sequencing. Reference mitogenomes were sequenced using Sanger sequencing whereas mitogenomes resequencing for population analyses were carried out with an Illumina Miseq sequencer. SNP genotyping was done using the DArTseq proprietary method.
- Hierarchy level
- Dataset
Metadata
- Metadata identifier
- urn:uuid/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339
- Language
- English
- Character encoding
- UTF8
Point of contact
- Parent metadata
Type of resource
- Resource scope
- Dataset
- Metadata linkage
-
https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/f7d3a11e-bd2b-4d8d-af3d-d2fc3a058339
Point of truth URL of this metadata record
- Date info (Creation)
- 2018-12-14T19:02:12
- Date info (Revision)
- 2026-05-31T17:43:59
Metadata standard
- Title
- ISO 19115-3:2018
Overviews
Spatial extent
N
S
E
W
Provided by
Associated resources
Not available