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    These data were collected on the RV L'Astrolabe (platform code: FHZI) from 27/02/2003 to 04/03/2003 on a trip from Dumont d'Urville to Hobart. Maximum photochemical efficiency of photosystem II (PSII), also called maximum quantum yield of PSII (Fv/Fm), has become one of the most widely utilized fluorescence parameters in phytoplankton research. It represents the potential photochemical efficiency, which is the probability that the light energy captured by the photosynthetic apparatus is being utilized as photochemistry. Fv/Fm has been shown to have an instant response to variations in physical and chemical properties and is interpreted as a diagnostic of the overall health or competence of phytoplankton. Together with the absorption cross section area of PSII and chlorophyll concentration, it can be used to measure primary production (Cheah et al. 2011, Deep Sea Research). Seawater from 3 m depth was supplied continuously from the ship’s clean seawater line. FRR fluorescence yields were measured continuously at 1 minute intervals in dark-adapted state (! 15 minutes dark-adaptation) using a flash sequence consisting of a series of 100 subsaturation flashlets (1.1 μs flash duration and 2.8 μs interflash period) and a series of 20 relaxation flashlets (1.1 μs flash duration and 51.6 μs interflash period).

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    These data describe quantitative exposure indices generated using cartographic fetch methods on a 0.01 degree grid across temperate Australia (South Australia, Victoria and Tasmania). Two indices are reported: openness and bathymetry-altered fetch. Openness is a measure of the distance of a site to the nearest coastline in all directions and describes potential exposure to locally generated seas and undefined swell. Bathymetry-altered fetch attempts to account for the attenuation of wave energy as waves move into shallow waters and encounter friction with the seafloor.

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    The Flinders CMR AUV survey was a pilot study undertaken in June 2013 as part of the National Marine Biodiversity Hub's National monitoring, evaluation and reporting theme. The aim of this theme is to develop a blueprint for the sustained monitoring of the South-east Commonwealth Marine Reserve Network. The particular aim of the survey was to contribute to an inventory of the distribution and cover of epibenthic biota in the reserve using IMOS AUV 'Sirius'. Data contained here represents a scored subset of the ~ 36,700 images collected at the Flinders CMR. Images were scored for proportion cover of visible macrobiota using 25 random points superimposed on each image. Taxon were biologically classified using CATAMI (http://catami.org/).

  • Mesozooplankton community composition and structure were examined throughout the D’Entrecasteaux Channel, Huon Estuary and North West Bay, Tasmania, from November 2004 to October 2005, the data represented by this record was collected on the 08/06/2005. The composition of the mesozooplankton community was typical of inshore, temperate marine habitats, with seasonally higher abundance in summer and autumn and lower numbers in winter and spring. Copepods were the largest contributors to total abundance across all seasons and stations, while cladocerans and appendicularians were proportionally abundant in spring and summer. The faecal pellets of these three main groups, along with those of krill and amphipods, also contributed significantly to material recovered from sediment traps. Meroplanktonic larvae of benthic animals showed short-term peaks in abundance and were often absent from the water column for long periods. Spatially, North West Bay and the Channel had a higher representation of typically marine species, including Calanus australis and Labidocera cervi, while truly estuarine species, such as the copepod Gladioferens pectinatus, were more important in the Huon Estuary.

  • We evaluate the status of shellfish reef ecosystems in Australia including their historical distribution and loss, regulation and management and identify current research priorities, policies and conservation mechanisms that can enable their future protection and repair. Eight species of shellfish were identified as developing complex, three-dimensional reef systems over large scales in intertidal and subtidal areas across tropical, subtropical and temperate Australia. A dramatic decline in the extent and condition of Australia’s shellfish reef ecosystems occurred during the mid-1800s to early 1900s in concurrence with extensive harvesting for food and lime production, habitat modification, disease outbreaks and a decline in water quality. Despite early attempts during the late 1800s to curb over exploitation and repair degraded reefs through protection, primitive aquaculture and enhancement, living examples of shellfish reefs are now rare. Only one Ostrea angasi reef is known to exist that is comparable in size to reefs historically commercially fished, compared to at least 118 previously known locations. Out of the 60 historically fished locations identified for Saccostrea glomerata, only five are known to still contain commercially harvestable sized reefs. The introduced oyster Crasostrea gigas is increasing in reef extent, whilst data on the remaining five reef-building species is limited, preventing a detailed assessment of their current status. Our knowledge of the extent, physical characteristics, biodiversity and ecosystem services of natural shellfish reefs in Australia is extremely limited. Australia is well equipped to reverse the decline of shellfish reef ecosystems with a number of state and federal protection laws, international conventions and management mechanisms already in place, all of which can be used to help protect remaining reefs and aid in future recovery. Several restoration projects have recently begun as awareness of historical loss grows amongst the community and groups become motivated to implement repair. As momentum continues to grow, Australia could serve as a long-term model for other regions that may currently have limited understanding of their shellfish reefs ecosystems but wish to work towards their future conservation. Data to be made publicly available with publication of manuscript by end 2018.

  • The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Point Ann, a site which lies within the Fitzgerald Biosphere, a UNESCO designated International Biosphere Reserve and one of the largest and biologically significant National Parks in Australia (DEC) on West Australia’s south coast, approximately 180km east of Albany.

  • Targeted trace elemental analysis was used to investigate the population structure and dispersal patterns of the holobenthic octopus species Octopus pallidus. Multi-elemental signatures within the pre-hatch region of the stylet (an internal ‘shell’) were used to determine the common origins and levels of connectivity of individuals collected from 5 locations in Tasmania. To determine whether hatchling elemental signatures could be used as tags for natal origin, hatchling stylets from 3 of the 5 locations were also analysed.

  • Antarctic Landfast sea ice (fast ice) is important climatologically, biologically and for logistics for short time-scale anomalies. Until recently, there hasn’t been an accurate, high-resolution fast ice extent dataset which can support an analysis on drivers of fast ice and most studies only investigate fast ice on limited regions of Antarctica in a limited time scale. There is a need to extend the spatial and temporal studying coverage to provide detailed information on the Antarctic coast over a longer period. This is the first detailed analysis to identify and quantify correlation between the environmental anomaly and fast ice anomaly mainly in the east Antarctic coast. By examining regional/local fast ice extent in in east Antarctic coast in the context of the broader and/or remote-teleconnected atmospheric circulation/properties using spatial correlation techniques, a strong correlation between NINO3 region and Lützow-Holm Bay fast ice and similar and significant correlation of regional scale factors from Lützow-Holm Bay to Mawson Coast mainly are found. The results of this thesis suggest that the pack ice, atmospheric factors and oceanic factors are important for interpreting fast ice anomalies. To identify and quantify correlation between the pack ice, temperature at 2m, wind at 10m, snow fall anomaly, sea surface temperature anomaly, ocean heat content anomaly and fast ice anomaly, backward multiple linear regression is conducted to demonstrate some predictive fast ice driver information by quantifying the correlation between different drivers and fast ice anomaly. The multiple linear regression also suggests that oceanic influences including pack ice are generally more important than atmospheric influences. Future experiments could be conducted to interpret fast ice anomalies in the context of the ocean mainly.

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    These data were collected on the RV L'Astrolabe (platform code: FHZI) from 22/01/2005 to 27/01/2005 on a trip from Dumont D'Urville to Hobart. Maximum photochemical efficiency of photosystem II (PSII), also called maximum quantum yield of PSII (Fv/Fm), has become one of the most widely utilized fluorescence parameters in phytoplankton research. It represents the potential photochemical efficiency, which is the probability that the light energy captured by the photosynthetic apparatus is being utilized as photochemistry. Fv/Fm has been shown to have an instant response to variations in physical and chemical properties and is interpreted as a diagnostic of the overall health or competence of phytoplankton. Together with the absorption cross section area of PSII and chlorophyll concentration, it can be used to measure primary production (Cheah et al. 2011, Deep Sea Research). Seawater from 3 m depth was supplied continuously from the ship’s clean seawater line. FRR fluorescence yields were measured continuously at 1 minute intervals in dark-adapted state (! 15 minutes dark-adaptation) using a flash sequence consisting of a series of 100 subsaturation flashlets (1.1 μs flash duration and 2.8 μs interflash period) and a series of 20 relaxation flashlets (1.1 μs flash duration and 51.6 μs interflash period).

  • This is a collection of data in East Antarctica from Southern Elephant seal's between 2004 and 2009. The monthly data set has been further classified by polynya and year. Additionally, we provide a dataset of the polynyas contours defined following a criteria of 75% of sea-ice concentration for each individual month between 2004 and 2019. Data are provided in .mat format