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2017

37 record(s)
 
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    Model output from a circumpolar realisation of the Regional Ocean Modelling System (ROMS). Model was run at a horizontal resolution of 1/4 degree and 31 vertical levels. Spatial domain was circumpolar out to 30 degrees South. Forcing comes from prescribed salt and heat fluxes based on a derived climatology from Tamura et al (2008). For open water regions the Tamura data is blended with open-water heat, salt and surface stress fluxes from a monthly NCEP2 climatology.

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    This meta data describes the raw output of the SES DEB-IBM built in NetLogo (version 6.0.1, March 2017; available from http://modelingcommons.org/browse/one_model/5348). The raw output consists of .csv files from several model runs. The detailed explanation of the model workings and background are published in Goedegebuure et al. (2018, PLoS ONE; Modelling southern elephant seals Mirounga leonina using an individual-based model coupled with a dynamic energy budget; DOI: 10.1371/journal.pone.0194950). In short: we developed an individual-based model which is coupled with a dynamic energy budget (a DEB-IBM) for southern elephant seals to demonstrate a method for detailed representation of marine mammals. We aimed to develop a model which could i) simulate energy use and life histories, as well as breeding traits of southern elephant seals in an emergent manner, ii) project a stable population over time, and iii) have realistic population dynamics and structure based on emergent life history features (such as age at first breeding, lifespan, fecundity and (yearling) survival). We evaluated the model's ability to represent a stable population over long time periods (> 10 generations), including the sensitivity of the emergent properties to variations in key parameters. The model was developed using life history data of female southern elephant seals from Macquarie Island and follows individuals from birth to death. The information collected in the raw output are the same for the baseline model (stable, and with standard parameters), and the modified models to test for 1) low, and 2) high food availability, 3) low, and 4) high weaning thresholds (energetic level at which pups transition to juveniles), 5) low, and 6) high puberty thresholds (energetic level at which juveniles transition to physically mature adults). As well as recording the parameter values as set in the model, each .csv file records: 1) run number (usually 1-10) 2) step (time step, days) 3) min age at first breeding (years) 4) min age of adult 5) mean age of adult 6) mean age of juvenile 7) max age of individuals 8) max number of pups per female 9) fecundity 10) max size of individuals 11) mean size of adults 12) mean size of juveniles 13) total count of modelled population 14) total count of embryos 15) total count of pups 16) total count of yearlings 17) total count of juveniles (includes yearlings) 18) total count of adults 19) mean food availability of independent individuals (those not reliant on their mother) that are not fasting/moulting 20) carrying capacity (or expected equilibrium) 21) seed NB. NetLogo calls individuals within the model turtles - thus output will mention turtles. Stages are as follows 0 = foetus, 1 = pup, 2 = juvenile, 3 = adult. Status are as follows, 0 = dependent on mother, 1 = fasting, 2 = foraging.

  • This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A11 - "Shark action plan". No datasets were generated by this project. -------------------- Conservation of elasmobranch species (sharks and rays) is an increasing priority globally, including Australia, as evidence of overexploitation of some species becomes apparent. Common issues and threats among elasmobranch species may improve management if considered holistically. This project will produce a Shark Action Plan assessing requirements for improved management including a summary of current status across the taxa, guidelines for reducing impacts and improving management, and identification of key knowledge gaps impeding conservation and management. This Plan will help guide policy for Australian elasmobranchs developed by DoEE and fishery managers. On-ground conservation will be developed from recommendations in this plan. Outputs • Shark Action Plan relevant to management of Australian elasmobranchs including an assessment of current threats, prioritised conservation and management actions for at-risk species and guidance on future management and data needs [written] • Manuscripts for scientific journals outlining the results of project components (eg, Conservation Dependent species framework) [written]

  • The Victorian seabed habitat map documents the distribution of broad benthic habitat types in Victorian Coastal Waters to the State’s 3 nautical mile jurisdictional limit. The map was created using a top-down modelling process whereby habitat descriptors were assigned using seafloor structure and biological information derived from multibeam sonar (Victorian Marine Habitat Mapping Project), bathymetric LiDAR (Future Coasts program) and observations from underwater video. Identification of benthic biota, to the lowest discernible taxonomic level, and substrate characteristics were recorded according to the Victorian Towed Video Classification scheme (Ierodiaconou et al. 2007).

  • This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Emerging Priorities project - "Assessing the effectiveness of waste management in reducing the levels of plastics entering Australia’s marine environment". For specific data outputs from this project, please see child records associated with this metadata. -------------------- This project will contribute to better understanding where to target investment in abatement measures by providing information on the extent of the leakage of plastic materials into the marine environment, where the greatest leakages are and in what quantity, and what form they take (e.g. plastic bags, packaging, takeaway containers). It will also identify what type of facilities, policies and outreach strategies governments (state and local) have in place and undertake an assessment of their effectiveness. The objectives of this project are to: 1. Investigate the relationship between plastic debris in the marine environment and litter data from nearby sites; 2. Determine whether there are identifiable pathways through which plastic debris moves into the marine environment; 3. Investigate whether particular investments in facilities, policies or outreach are effective in reducing plastic debris on coasts and in oceans and where investment should be directed in the future; and 4. Initiate an internal department workshop to socialise the outcomes of the research across the relevant arms of the department, including staff involved in approvals, waste, protected species, and parks, and explore the utility of existing data to address the Department’s needs, including those arising from the TAP and the Senate Inquiry. Planned Outputs • A written report and plain English summary for use by state, territory and local governments, which: - Synthesises existing knowledge on the relationship between debris in the marine environment and litter data from nearby sites, the types of litter and the pathways through which litter moves into the marine environment. - Summarises existing coastal debris/litter survey methodologies with discussion of applications of each. • A list of the activities and programs associated with plastic waste reduction (including facilities, policies and outreach), • A publically accessible analysis and summary of different survey methods aiming to reduce debris inputs to the marine environment. - The cost of the activities and programs - Ranking of activities and programs regarding their effectiveness in reducing plastic waste in the marine environment. • Conclusions on where marine debris hot spots are in Australia’s marine environment and effective mitigation strategies. • Recommendations on where more information (scientific, policy, infrastructure, community engagement) is required to obtain a better understanding of the problem and possible solutions. This may include identifying knowledge gaps and needs for further analysis

  • This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A12 - "Scoping a seascape approach to managing and recovering Northern Australian threatened and migratory marine species". For specific data outputs from this project, please see child records associated with this metadata. -------------------- Northern Australia is the current focus of substantial economic development, which has the potential to impact biodiversity and cultural values. The Northern Seascape scoping project will assess the status of knowledge of EPBC-listed Threatened and Migratory Marine species, and pressures, Indigenous priorities, habitats, fisheries bycatch, and EPBC referrals in relation to them across the North Marine Bioregion (coast to EEZ edge). The focus will be at the multiple taxa level, including elasmobranchs, shorebirds, turtles and cetaceans. The project will scope research needs and directions for a broad Northern Seascape project (2018–2020), by identifying future research hotspots. Planned Outputs • Maps of Threatened and Migratory Marine species occurrence and habitats, and a gap analysis of research and data needs • Maps of state and trends in pressures and Threatened and Migratory Marine species, and the intersection between them • A report on Indigenous marine research and management priorities for Threatened and Migratory Marine species • Maps and time-series graphs that depict the extent and timing of past changes in coastal habitats that are important for TMM species • Identification of Threatened and Migratory Marine species bycatch and bycatch mitigation research priorities • Identification of EPBC referral spatial and species trends • Data, data visualisation and summaries available online through an appropriate web-based portal and/or existing internal DoEE information products • Project report synthesizing northern Australian Threatened and Migratory Marine species, pressures, Indigenous priorities, coastal habitat change, fisheries bycatch mitigation research priorities, and EPBC referral trends, and the identification of future research hotspots

  • This database contains acoustic telemetry data for euryhaline elasmobranchs in northern Australian rivers. Data was collected under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species', and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. An acoustic receiver array was deployed in the Adelaide River, and another in the Alligator Rivers (primarily the South Alligator River) to monitor the movements, habitat use and natural mortality of threatened river sharks (Glyphis species) and sawfishes (Pristis species). Receiver deployment data is available through the IMOS Animal Tracking Facility database (visit https://animaltracking.aodn.org.au/receivers/deployment and search for project 'NESP Northern Australian hotspots for the recovery of threatened euryhaline species'). Detection data is currently embargoed until end 2023.

  • This database contains molecular data of elasmobranchs in northern Australian rivers, estuaries and coasts undertaken under the National Environmental Research Program (NERP) Marine Biodiversity Hub Project 2.4 'Supporting Management of Listed and Rare Species'. and the National Environmental Science Program (NESP) Marine Biodiversity Hub Project A1 'Northern Australian Hotspots for the Recovery of Threatened Euryhaline Elasmobranchs'. Surveys using gillnets and rod-and-line were undertaken in the Top End region of the Northern Territory and the Kimberley region of Western Australia. Tissue samples were collected from all elasmobranchs for molecular analyses (population genetics and close-kin mark-recapture).

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    This dataset provides predictions of pelagic vertebrate species richness and relative abundance throughout sub-areas of the Oceanic Shoals Australian Marine Park (AMP). Predictive models were constructed from in situ observations made using mid-water stereo-BRUVS (baited remote underwater video systems) deployed at 116 sites within three sampling areas in the western half of the AMP. Sampling took place in September and October 2012 aboard the RV Solander (survey GA0339/SOL5650), as part of an expedition supported by the National Environmental Research Programme's Marine Biodiversity Hub (Theme 3). Expedition partners included the Australian Institute of Marine Science (AIMS), Geoscience Australia (GA), The Centre for Marine Futures at the University of Western Australia (UWA), and the Northern Territory Museum. Full methodological details can be found in the following peer-reviewed publication: Bouchet, P.J., Letessier, T.B., Caley, M.J., Nichol, S.L., Hemmi, J.M., Meeuwig, J. (2020). Submerged carbonate banks aggregate pelagic megafauna in offshore tropical Australia. Front. Mar. Sci. doi: 10.3389/fmars.2020.00530

  • This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Emerging Priorities project - "Spatial distribution of marine wildlife in the Bremer Bay region". For specific data outputs from this project, please see child records associated with this metadata. -------------------- The Bremer Canyon system is a recognised aggregation area for marine wildlife and predictable aggregations of the orca (Orcinus orca) underpin local ecotourism. Additionally, the value of the region has been recognised in the establishment of the Bremer Commonwealth Marine Reserve (CMR) (https://www.environment.gov.au/topics/marine/marine-reserves/south-west/bremer) and the identification of the Albany canyon group and adjacent shelf break as a Key Ecological Feature in the South-West Marine Bioregional Plan (https://www.environment.gov.au/sprat-public/action/kef/view/23;jsessionid=01AD87551D0DE1B0248C8722BE137004). Little is known about the shelf and canyon region given its remote location and the relatively high cost of conducting offshore research. However, citizen-driven science has documented a stable aggregation of marine wildlife including orcas, sperm whales (Physeter microcephalus), and giant squid (Architeuthis sp.) occurring to the west of the established CMR. There is also speculation that this stable wildlife aggregation may be driven by seabed oil seeps with a hydrocarbon-based food chain although this is unsubstantiated. The potential uniqueness of this wildlife aggregation within the region and what drives its presence remains unknown. There is a significant need to determine the regional importance of this aggregation and its relation to the existing protection afforded by the Bremer CMR. The objective of this project is to improve the understanding of the importance of the Bremer CMR and surrounding region to marine wildlife. The project will determine the distribution of key wildlife of interest across the recognised pelagic aggregation and the Bremer CMR in order to inform Australian Government decision-making to protect the environment, conserve biodiversity and allow for sustainable use. The project will also improve understanding about the likely causes for wildlife aggregations and provide recommendations for future research options. Planned Outputs • A workshop of key experts, managers and external stakeholders to build on the literature review, identify additional data sources and recommend research priorities; • A workshop report including a literature review to synthesise existing information, data and publications on the region in relation to wildlife aggregations, general ecology, oceanography and productivity; • Marine wildlife survey – given the need to cover a large spatial area (i.e. the CMR and the known aggregation area in a single day), the preferred method is for an aerial survey with two observers. We propose that the team mobilises from Esperance given proximity to the CMR and ability to refuel etc. A team of two (2) scientific observers will be included plus an opportunity for an additional observer. The research will involve five (5) days of aerial surveying over no more than a seven (7) day period. The project will investigate the occurrence and distribution of orcas both inside and outside the known aggregation area (including the Bremer CMR). • Analysis of existing acoustic data – Curtin University holds data from acoustic surveys and will interpret these data in the context of distinguishing the presence and distribution of orcas, other cetaceans and other biota. • Analysis of existing orca distribution data within the aggregation – Curtin University has previously collected data on visual sightings of orcas at the aggregation. These data will be the spatial and temporal distribution of orcas at the aggregation site. This has the capacity to identify key patterns in orca behaviour within the known aggregation area. • Collation of orca observations held by ecotourism operator Naturaliste Charter – this collation will provide the opportunity to determine how best to use these data and generate communication products given the collection of imagery. • Pelagic fish survey – an existing planned survey to the Bremer CMR will be extended to include the aggregation area to allow the diversity, abundance and biomass of pelagic sharks and fishes in the CMR and the aggregation area to be compared. This will allow a comparison of the relative richness of the known aggregation area to the CMR with respect to pelagic shark and fish abundance. • Hydrocarbon signals in squid - Preliminary investigation into whether hydrocarbon signals can be detected in squid as a first step in determining whether the wildlife aggregation may be supported by hydrocarbon seeps. Murdoch University hold squid samples from the aggregation area that form the basis of this analysis. • Movement data to determine how adult orcas use the Bremer CMR and the aggregation area - tags will also be placed on at least three (3) adult orcas from the known aggregation site to clarify if those individual orcas are also transiting or using the Bremer CMR. • Knowledge exchange and communication outputs – each component of the project will produce materials for use by Parks Australia. Likely considerations are 3D fly-thru, animations, infographics, brochure, videos, articles. • Reporting outputs – a progress report focussing on completed field work and preliminary results will be produced followed by a final synthesis report.