Marine Futures Project - Jurien Bay - reef habitat

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Jurien Bay. The Jurien Bay marine environment is highly diverse, and is home to a wide variety of species, including sea lions and sea birds on the many offshore islands. Limestone reef and seagrass habitats in the area support a diverse fish and invertebrate fauna, and a local crayfishing industry is based around the Western Rock Lobster (Panulirus cygnus).

Grey Nurse Shark tissue sample collection (NESP MBH A9)

This record describes the sample collection location for grey nurse shark as part of NESP MB Project A9 - Grey Nurse Shark CK-MR Population Estimate – East Coast. The data attached to this record describes the locations and vB parameters of tissue samples collected between December 2002 and April 2017. Sequencing data will be added to ALA as it becomes available. See https://fieldcapture.ala.org.au/project/index/b3376517-e418-4a38-ba45-63faae7ed8be for updates.

Survey and stock size estimates of the shallow reef (0-15 m) and shoal area (15-50 m) marine resources and habitat mapping within the MOU74 Box

The MOU74 Box, off the northwest Australian coastline, is an area of approximately 50,000 sq. km within the Australian Fishing Zone. It contains five large, shallow reef systems (less than 15 m deep) ranging in size from 227 sq. km (Ashmore Reef) to 4.5 sq. km (Browse Island). They total approximately 560 sq. km in area. Immediately north of the MOU74 Box within the Australian Fishing Zone (Little Area A) is another shallow reef, Hibernia Reef. In addition to the shallow reefs, there is approximately 925 sq. km of shoal areas (15 to 50 m deep) within the MOU74 Box and 301 sq. km of shoal areas in Little Area A. The reefs and shoals support populations of sedentary reef resources including several species of holothurians (beche-de-mer, sea cucumbers) and trochus, as well as reef-associated fin-fish and sharks. These resources have been fished for many years by Indonesian fishers. Ashmore Reef was declared a Marine Nature Reserve in 1983, banning the removal of fauna and flora to a depth of 50 m. The remaining reefs in the area are under continued, and probably increasing, fishing pressure. The marine resources of the MOU74 Box are managed by the Australian Government. Under the terms of a memorandum of understanding (MOU) between the Australian and Indonesian governments, continued traditional fishing by Indonesian fishing vessels is allowed, principally for sedentary resources such as beche-de-mer (trepang) and trochus, but also fin-fish and reef shark. Apart from limited catch data collected by surveillance and regulatory authorities, little is known about the catch of the Indonesian fishers and the effects of fishing on the target species. There are concerns that the current level of fishing may be unsustainable. In September and October 1998, CSIRO Division of Marine Resources surveyed the shallow reefs (0-15 m deep) and shoal areas (15-50 m deep) of the MOU74 Box area and Little Area A to the north. Its purpose was to assess the status of the reef resources in the area, and the environment that supports them. Fieldwork for the survey was completed on 10 October 1998. Overall, the sedentary marine living resources on the shallow reefs were heavily depleted with the high-value species over-exploited and the lower value species probably either fully or over-exploited. Despite the low density, there appears to be a sustained fishing effort by Indonesian fishers in the area. A drastic reduction in effort would be required to allow for a recovery of the higher value species, and to protect other species from severe depletion. The exception is Ashmore Reef, where there were significant populations of most target species. However, there is most likely some illegal fishing occurring on Ashmore Reef and there is clear evidence of exploitation of at least the high-value resources. The nature of these fisheries and the depleted state of the other reefs in the MOU74 Box suggests that the remaining resources on Ashmore Reef could be quickly depleted if the protection currently given to the reef is not maintained and possibly enhanced. For many reasons, including the potential for recruitment of larvae to depleted reefs, it is important that these populations are protected. Year round protection of the resources on Ashmore Reef should be considered. This record describes the following survey data for the Timor MOU74 Box: • Classified satellite habitat map for Scott and Seringapatam Reefs. • Classified satellite habitat map for Ashmore, Hibernia and Cartier Reefs.

Marine Futures Project - Middle Island - biota

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Middle Island, the project's easternmost site located within the Recherche Archipelago. The Recherche Archipelago provides habitats for a diverse range of both terrestrial and marine species, and can be accessed either by vessel from the town of Esperance, or by four wheel drive along the coastal roads adjoining the Cape Arid National Park.

NESP MB Project A2 – Quantification of national ship strike risk

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A2 - "Quantification of national ship strike risk". This project has been superseded by NESP Marine Biodiversity Hub Project C5 - "Quantification of risk from shipping to large marine fauna across Australia" (see link in Distribution and On-Line Resources section of this record). -------------------- Given Australian coastal development, and associated increases in shipping, ship collisions with marine fauna (specifically marine mammals and turtles) is of increasing concern. Tools and research are needed to spatially quantify the risk of ship strike to help develop management strategies. This work will use shipping density/speed data from the recent past, in parallel with species distribution/habitat models, to produce relative risk maps that can be used to identify areas and times where there is co-occurrence of at-risk marine fauna and shipping. From these maps, strategies (such as speed reduction zones/times) could be implemented to minimise the impact of vessel strike on marine fauna. Planned Outputs • Initial scoping report of ship strike risk, summarising what is currently known on at-risk species, the data available, shipping size/type data needed and providing recommendations on what species to investigate ranked from easiest to most difficult; • Identification of data deficiencies; • Full Australia-wide fine-scale shipping density and average speed maps for 2012 – present; • A suite of distribution information/maps for the various species investigated; • Risk map for selected species. With individual species, results delivered during the life of the project. The risk maps will range from full fine-scale maps when data is present, to coarse-scale ‘regions of concern’ for species where distribution data is limited to approximate extent.

Juvenile shark occurrence inferred from baited remote underwater video surveys Northwest Australia (2003-2013)

This dataset describes the predicted occurrence of juvenile sharks around Northwest Australia, mapped over a 0.01 degree spatial grid. Juvenile sharks were mapped at two taxonomic levels: order by including all juvenile sharks sampled (all juveniles) and species by considering the three most abundant species sampled separately (grey reef (Carcharhinus amblyrhynchos), sandbar (Carcharhinus plumbeus), and whitetip reef (Triaenodon obesus) sharks). The data cover the period 2003-2013 and are derived from an analysis of count data derived from baited remote underwater videos deployed through various sampling programs. Further detail can be found in the following peer-reviewed publication: Oh, BZL, Sequeira, AMM, Meekan, MG, Ruppert, JLW and Meeuwig, JJ (2017), Predicting occurrence of juvenile shark habitat to improve conservation planning. Conservation Biology, 31: 635–645. doi:10.1111/cobi.12868 Below is a full list of species, with contributions to the total counted (%): -------------------------------------------------- Silvertip shark / Carcharhinus albimarginatus – 4.14% Grey reef shark / Carcharhinus amblyrhynchos – 28.06% Bronze whaler / Carcharhinus brachyurus – 0.18% Galapagos shark / Carcharhinus galapagensis – 0.09% Bull shark / Carcharhinus leucas – 0.18% Common-Australian blacktip shark / Carcharhinus limbatus-C.tilstoni – 1.38% Blacktip reef shark / Carcharhinus melanopterus – 1.56% Sandbar shark / Carcharhinus plumbeus – 4.78% Spot-tail shark / Carcharhinus sorrah – 0.18% Tiger shark / Galeocerdo cuvier – 2.39% Sliteye-Sharpnose shark / Loxodon macrorhinus-Rhizoprionodon spp. – 6.35% Lemon shark / Negaprion acutidens – 1.01% Whitetip reef shark / Triaenodon obesus – 18.95% Tawny shark / Nebrius ferrugineus – 0.83% Grey carpetshark / Chiloscyllium punctatum – 1.38% Taselled wobbegong / Eucrossorhinus dasypogon – 0.09% Scalloped hammerhead / Sphyrna lewini – 0.46% Great hammerhead / Sphyrna mokarran – 3.86% Zebra shark / Stegostoma fasciatum – 0.83% Sicklefin houndshark / Hemitriakis falcata – 1.01% Grey gummy shark / Mustelus ravidus – 0.28% Archived BRUVS video files used in this study are the intellectual property of multiple institutions and industry partners and are not published in this record. See credits for further information.

Marine Futures Project - Geographe Bay - reef habitat

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Geographe Bay in the southwest Capes region. The marine environment at this location varies from extensive seagrass meadows in protected waters, to kelp-dominated granite and limestone reefs in areas of high wave energy. A small number of corals are also found throughout the region, reflecting the influence of the southward flow of the Leeuwin Current. The fish fauna is also diverse, with a high proportion of endemic species.

Biodeposition from four bivalves species using natural estuary water in Australia

The threatened status of shellfish reefs has been well established globally (e.g Beck et al 2011) however the ecological consequences of these losses is still largely unknown. In Australia, shellfish reefs are one of the most imperilled marine habitat types (Gillies et al 2018), due to historical overharvest and widespread eutrophication of coastal waters through the use of fertilizers, livestock and human waste. Marine bivalves are important ecosystem engineers providing habitat, shelter and a food source for other species in benthic soft-sediment environments. In addition, filter-feeding bivalves link benthic and pelagic components of ecosystems through filtration and excretion. Through their filter feeding, they produce large amounts of faeces (digested seston) and pseudofaeces (rejected particles bound up in mucus) which are deposited on the benthos. This process brings energy and nutrients from the pelagic system to the benthic system (bentho-pelagic coupling). The removal of large quantities of seston can serve an important ecosystem function by improving water quality and clarity. The filtration of water performed by bivalves has been demonstrated to reduce water turbidity, improving light penetration and thereby enhancing growing conditions for seagrasses (Wall et al 2008). In systems where healthy populations of bivalves remain, they can filter a volume equivalent or larger than the entire estuary volume within the residence time of the water (zu Ermgassen et al 2013). While such densities of oysters are rare today, this highlights the critical ecosystem services that are lost when oyster reefs decline. Furthermore, it demonstrates the potential functions that can be regained through oyster reef restoration. Given the increasing awareness of the decline of these ecosystems, interest in restoration efforts to restore critical ecosystem functions has been growing. However, conservation and restoration decision making is underpinned by reliable quantification of relevant ecosystem services (zu Ermgassen et al 2016). For example, there are plans to restore some of the natural oyster reefs of Sydney Rock Oyster (Saccostrea glomerata) in Port Stephens, New South Wales. One of the main drivers motivating this restoration project is restoring lost ecosystem services. The filtration rates of Australian oysters has been demonstrated in aquarium studies using filtered water augmented with algae, yet little is known about filtration and biodeposition rates of oysters using raw seawater. In this study, we provide the first evaluation of the filtration and biodeposition rate of four species of bivalves using raw seawater, providing a proxy for natural biodeposition rates. As such, this study provides a first indication of the filtration/nutrient cycling function that may be restored following oyster restoration efforts.

AGDC Time Series Video - Southern Stradbroke Island

Time Series video to support Project C3 of the Marine Biodiversity Hub NESP programme 2015/2016. The video illustrates coastal change at the Southern end of Stradbroke Island QLD, using 118 Landsat observations from within the Australian Geoscience Data Cube (AGDC) from 1987-2016.

Marine Futures Project - Southwest Capes - reef habitat

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including the Capes region of southwest Western Australia. The area is one of the most diverse temperate marine environments in Australia. Warm, tropical waters of the Leeuwin Current mingle with the cool waters of the Capes Current, resulting in high finfish diversity, including tropical and temperate species, as well as internationally significant seagrass diversity with meadows occurring at depths greater than 40 metres. The region's geomorphology is complex with an array of intertidal and subtidal reef environments. Many marine plants and animals are endemic to the southern coast of Australia due to its long geographical isolation, with seagrass, algae and estuarine habitats functioning as spawning, nursery and feeding grounds for a wide range of invertebrates and fish. Significant numbers of marine mammals also frequent the area, including the blue whale, the largest of all marine creatures.